Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS00700

Experiment: 3-octanone 6.3476 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS00695 and AZOBR_RS00700 are separated by 101 nucleotidesAZOBR_RS00700 and AZOBR_RS00705 are separated by 399 nucleotides AZOBR_RS00695: AZOBR_RS00695 - transporter, at 137,157 to 138,806 _RS00695 AZOBR_RS00700: AZOBR_RS00700 - transporter, at 138,908 to 140,587 _RS00700 AZOBR_RS00705: AZOBR_RS00705 - cytochrome C biogenesis protein CcmA, at 140,987 to 141,628 _RS00705 Position (kb) 138 139 140 141Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 138.316 kb on + strand, within AZOBR_RS00695at 138.316 kb on + strand, within AZOBR_RS00695at 138.317 kb on - strand, within AZOBR_RS00695at 138.592 kb on + strand, within AZOBR_RS00695at 138.592 kb on + strand, within AZOBR_RS00695at 138.592 kb on + strand, within AZOBR_RS00695at 138.593 kb on - strand, within AZOBR_RS00695at 138.735 kb on + strandat 138.735 kb on + strandat 138.735 kb on + strandat 138.735 kb on + strandat 138.736 kb on - strandat 138.909 kb on + strandat 138.910 kb on - strandat 138.910 kb on - strandat 138.959 kb on - strandat 138.964 kb on + strandat 138.965 kb on - strandat 138.969 kb on + strandat 138.969 kb on + strandat 139.080 kb on + strand, within AZOBR_RS00700at 139.080 kb on + strand, within AZOBR_RS00700at 139.081 kb on - strand, within AZOBR_RS00700at 139.389 kb on + strand, within AZOBR_RS00700at 139.389 kb on + strand, within AZOBR_RS00700at 139.389 kb on + strand, within AZOBR_RS00700at 139.389 kb on + strand, within AZOBR_RS00700at 139.389 kb on + strand, within AZOBR_RS00700at 139.390 kb on - strand, within AZOBR_RS00700at 139.390 kb on - strand, within AZOBR_RS00700at 139.390 kb on - strand, within AZOBR_RS00700at 139.390 kb on - strand, within AZOBR_RS00700at 139.615 kb on - strand, within AZOBR_RS00700at 140.343 kb on + strand, within AZOBR_RS00700at 140.343 kb on + strand, within AZOBR_RS00700at 140.344 kb on - strand, within AZOBR_RS00700at 140.344 kb on - strand, within AZOBR_RS00700at 140.633 kb on - strandat 140.677 kb on - strandat 140.787 kb on - strandat 140.953 kb on + strandat 140.953 kb on + strandat 140.954 kb on - strandat 140.954 kb on - strandat 140.954 kb on - strandat 140.955 kb on + strandat 140.955 kb on + strandat 140.955 kb on + strandat 140.955 kb on + strandat 140.955 kb on + strandat 140.955 kb on + strandat 140.956 kb on - strandat 140.956 kb on - strandat 140.956 kb on - strandat 140.956 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 3-octanone 6.3476 mM
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138,316 + AZOBR_RS00695 0.70 -0.3
138,316 + AZOBR_RS00695 0.70 -0.9
138,317 - AZOBR_RS00695 0.70 +0.3
138,592 + AZOBR_RS00695 0.87 +1.8
138,592 + AZOBR_RS00695 0.87 +3.5
138,592 + AZOBR_RS00695 0.87 +0.3
138,593 - AZOBR_RS00695 0.87 +1.4
138,735 + +0.4
138,735 + +1.9
138,735 + -3.8
138,735 + +0.8
138,736 - -0.8
138,909 + -0.2
138,910 - +1.2
138,910 - -0.2
138,959 - -0.7
138,964 + +0.2
138,965 - -0.0
138,969 + +0.4
138,969 + +0.2
139,080 + AZOBR_RS00700 0.10 -0.7
139,080 + AZOBR_RS00700 0.10 -0.9
139,081 - AZOBR_RS00700 0.10 +1.0
139,389 + AZOBR_RS00700 0.29 -0.3
139,389 + AZOBR_RS00700 0.29 +0.2
139,389 + AZOBR_RS00700 0.29 +0.0
139,389 + AZOBR_RS00700 0.29 -3.2
139,389 + AZOBR_RS00700 0.29 -0.0
139,390 - AZOBR_RS00700 0.29 +1.1
139,390 - AZOBR_RS00700 0.29 -0.2
139,390 - AZOBR_RS00700 0.29 +0.1
139,390 - AZOBR_RS00700 0.29 -1.4
139,615 - AZOBR_RS00700 0.42 -0.5
140,343 + AZOBR_RS00700 0.85 -0.7
140,343 + AZOBR_RS00700 0.85 +0.6
140,344 - AZOBR_RS00700 0.85 +0.3
140,344 - AZOBR_RS00700 0.85 -0.1
140,633 - +0.1
140,677 - +0.8
140,787 - -0.1
140,953 + -0.9
140,953 + -1.4
140,954 - -0.6
140,954 - -0.9
140,954 - -1.0
140,955 + +0.5
140,955 + -2.8
140,955 + -0.2
140,955 + +0.4
140,955 + -0.6
140,955 + -3.9
140,956 - -0.2
140,956 - -0.1
140,956 - -1.4
140,956 - -0.3

Or see this region's nucleotide sequence