Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS00695

Experiment: 3-octanone 6.3476 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS00690 and AZOBR_RS00695 are separated by 152 nucleotidesAZOBR_RS00695 and AZOBR_RS00700 are separated by 101 nucleotides AZOBR_RS00690: AZOBR_RS00690 - ATP-binding protein, at 136,198 to 137,004 _RS00690 AZOBR_RS00695: AZOBR_RS00695 - transporter, at 137,157 to 138,806 _RS00695 AZOBR_RS00700: AZOBR_RS00700 - transporter, at 138,908 to 140,587 _RS00700 Position (kb) 137 138 139Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 136.535 kb on + strand, within AZOBR_RS00690at 137.077 kb on + strandat 137.078 kb on - strandat 137.219 kb on - strandat 137.230 kb on + strandat 138.316 kb on + strand, within AZOBR_RS00695at 138.316 kb on + strand, within AZOBR_RS00695at 138.317 kb on - strand, within AZOBR_RS00695at 138.592 kb on + strand, within AZOBR_RS00695at 138.592 kb on + strand, within AZOBR_RS00695at 138.592 kb on + strand, within AZOBR_RS00695at 138.593 kb on - strand, within AZOBR_RS00695at 138.735 kb on + strandat 138.735 kb on + strandat 138.735 kb on + strandat 138.735 kb on + strandat 138.736 kb on - strandat 138.909 kb on + strandat 138.910 kb on - strandat 138.910 kb on - strandat 138.959 kb on - strandat 138.964 kb on + strandat 138.965 kb on - strandat 138.969 kb on + strandat 138.969 kb on + strandat 139.080 kb on + strand, within AZOBR_RS00700at 139.080 kb on + strand, within AZOBR_RS00700at 139.081 kb on - strand, within AZOBR_RS00700at 139.389 kb on + strand, within AZOBR_RS00700at 139.389 kb on + strand, within AZOBR_RS00700at 139.389 kb on + strand, within AZOBR_RS00700at 139.389 kb on + strand, within AZOBR_RS00700at 139.389 kb on + strand, within AZOBR_RS00700at 139.390 kb on - strand, within AZOBR_RS00700at 139.390 kb on - strand, within AZOBR_RS00700at 139.390 kb on - strand, within AZOBR_RS00700at 139.390 kb on - strand, within AZOBR_RS00700at 139.615 kb on - strand, within AZOBR_RS00700

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Per-strain Table

Position Strand Gene LocusTag Fraction 3-octanone 6.3476 mM
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136,535 + AZOBR_RS00690 0.42 -0.7
137,077 + +0.7
137,078 - +0.5
137,219 - +0.3
137,230 + -1.1
138,316 + AZOBR_RS00695 0.70 -0.3
138,316 + AZOBR_RS00695 0.70 -0.9
138,317 - AZOBR_RS00695 0.70 +0.3
138,592 + AZOBR_RS00695 0.87 +1.8
138,592 + AZOBR_RS00695 0.87 +3.5
138,592 + AZOBR_RS00695 0.87 +0.3
138,593 - AZOBR_RS00695 0.87 +1.4
138,735 + +0.4
138,735 + +1.9
138,735 + -3.8
138,735 + +0.8
138,736 - -0.8
138,909 + -0.2
138,910 - +1.2
138,910 - -0.2
138,959 - -0.7
138,964 + +0.2
138,965 - -0.0
138,969 + +0.4
138,969 + +0.2
139,080 + AZOBR_RS00700 0.10 -0.7
139,080 + AZOBR_RS00700 0.10 -0.9
139,081 - AZOBR_RS00700 0.10 +1.0
139,389 + AZOBR_RS00700 0.29 -0.3
139,389 + AZOBR_RS00700 0.29 +0.2
139,389 + AZOBR_RS00700 0.29 +0.0
139,389 + AZOBR_RS00700 0.29 -3.2
139,389 + AZOBR_RS00700 0.29 -0.0
139,390 - AZOBR_RS00700 0.29 +1.1
139,390 - AZOBR_RS00700 0.29 -0.2
139,390 - AZOBR_RS00700 0.29 +0.1
139,390 - AZOBR_RS00700 0.29 -1.4
139,615 - AZOBR_RS00700 0.42 -0.5

Or see this region's nucleotide sequence