Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS00105

Experiment: 3-octanone 6.3476 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS00095 and AZOBR_RS00100 are separated by 49 nucleotidesAZOBR_RS00100 and AZOBR_RS00105 are separated by 442 nucleotidesAZOBR_RS00105 and AZOBR_RS00110 are separated by 164 nucleotidesAZOBR_RS00110 and AZOBR_RS00115 are separated by 350 nucleotides AZOBR_RS00095: AZOBR_RS00095 - MFS transporter permease, at 8,298 to 9,482 _RS00095 AZOBR_RS00100: AZOBR_RS00100 - membrane protein, at 9,532 to 9,975 _RS00100 AZOBR_RS00105: AZOBR_RS00105 - ornithine decarboxylase, at 10,418 to 11,554 _RS00105 AZOBR_RS00110: AZOBR_RS00110 - hypothetical protein, at 11,719 to 11,898 _RS00110 AZOBR_RS00115: AZOBR_RS00115 - HAD hydrolase, at 12,249 to 12,935 _RS00115 Position (kb) 10 11 12Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 9.546 kb on - strandat 9.602 kb on + strand, within AZOBR_RS00100at 9.603 kb on - strand, within AZOBR_RS00100at 9.603 kb on - strand, within AZOBR_RS00100at 9.603 kb on - strand, within AZOBR_RS00100at 9.603 kb on - strand, within AZOBR_RS00100at 9.798 kb on - strand, within AZOBR_RS00100at 9.989 kb on - strandat 10.046 kb on + strandat 10.067 kb on + strandat 10.068 kb on - strandat 10.068 kb on - strandat 10.144 kb on + strandat 10.144 kb on + strandat 10.145 kb on - strandat 10.169 kb on + strandat 10.170 kb on - strandat 10.193 kb on + strandat 10.426 kb on + strandat 10.505 kb on + strandat 10.505 kb on + strandat 10.506 kb on - strandat 10.506 kb on - strandat 10.506 kb on - strandat 10.547 kb on + strand, within AZOBR_RS00105at 11.105 kb on + strand, within AZOBR_RS00105at 11.267 kb on + strand, within AZOBR_RS00105at 11.324 kb on + strand, within AZOBR_RS00105at 11.414 kb on + strand, within AZOBR_RS00105at 11.414 kb on + strand, within AZOBR_RS00105at 11.415 kb on - strandat 11.430 kb on - strand, within AZOBR_RS00105at 11.501 kb on + strandat 11.501 kb on + strandat 11.502 kb on - strandat 11.502 kb on - strandat 11.721 kb on - strandat 11.876 kb on + strand, within AZOBR_RS00110at 11.876 kb on + strand, within AZOBR_RS00110at 11.876 kb on + strand, within AZOBR_RS00110at 11.950 kb on - strandat 11.950 kb on - strandat 12.054 kb on + strandat 12.055 kb on - strandat 12.111 kb on - strandat 12.209 kb on - strandat 12.209 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 3-octanone 6.3476 mM
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9,546 - -2.4
9,602 + AZOBR_RS00100 0.16 -1.6
9,603 - AZOBR_RS00100 0.16 -2.4
9,603 - AZOBR_RS00100 0.16 -1.1
9,603 - AZOBR_RS00100 0.16 +1.9
9,603 - AZOBR_RS00100 0.16 +1.9
9,798 - AZOBR_RS00100 0.60 -0.6
9,989 - -3.1
10,046 + +1.9
10,067 + +2.3
10,068 - -2.5
10,068 - +0.3
10,144 + -1.2
10,144 + -2.0
10,145 - +1.9
10,169 + -0.5
10,170 - +0.9
10,193 + +0.7
10,426 + +0.4
10,505 + -1.1
10,505 + -0.2
10,506 - -0.7
10,506 - +0.3
10,506 - +1.9
10,547 + AZOBR_RS00105 0.11 -0.0
11,105 + AZOBR_RS00105 0.60 +1.0
11,267 + AZOBR_RS00105 0.75 -0.0
11,324 + AZOBR_RS00105 0.80 -1.6
11,414 + AZOBR_RS00105 0.88 -0.2
11,414 + AZOBR_RS00105 0.88 +0.9
11,415 - +1.9
11,430 - AZOBR_RS00105 0.89 -1.1
11,501 + -0.4
11,501 + -0.2
11,502 - -0.1
11,502 - -0.1
11,721 - -0.1
11,876 + AZOBR_RS00110 0.87 -0.3
11,876 + AZOBR_RS00110 0.87 +1.2
11,876 + AZOBR_RS00110 0.87 -2.2
11,950 - +0.5
11,950 - +0.7
12,054 + +0.4
12,055 - +0.0
12,111 - +0.2
12,209 - -0.6
12,209 - +0.5

Or see this region's nucleotide sequence