Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS30125

Experiment: 3-octanone 6.3476 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS30120 and AZOBR_RS30125 overlap by 10 nucleotidesAZOBR_RS30125 and AZOBR_RS30130 are separated by 115 nucleotides AZOBR_RS30120: AZOBR_RS30120 - C4-dicarboxylate ABC transporter permease, at 96,948 to 98,231 _RS30120 AZOBR_RS30125: AZOBR_RS30125 - C4-dicarboxylate ABC transporter permease, at 98,222 to 98,710 _RS30125 AZOBR_RS30130: AZOBR_RS30130 - C4-dicarboxylate ABC transporter, at 98,826 to 99,785 _RS30130 Position (kb) 98 99Strain fitness (log2 ratio) -2 -1 0 1 2at 97.346 kb on - strand, within AZOBR_RS30120at 97.360 kb on + strand, within AZOBR_RS30120at 97.360 kb on + strand, within AZOBR_RS30120at 97.360 kb on + strand, within AZOBR_RS30120at 97.360 kb on + strand, within AZOBR_RS30120at 97.360 kb on + strand, within AZOBR_RS30120at 97.360 kb on + strand, within AZOBR_RS30120at 97.360 kb on + strand, within AZOBR_RS30120at 97.360 kb on + strand, within AZOBR_RS30120at 97.360 kb on + strand, within AZOBR_RS30120at 97.361 kb on - strand, within AZOBR_RS30120at 97.361 kb on - strand, within AZOBR_RS30120at 97.361 kb on - strand, within AZOBR_RS30120at 97.463 kb on - strand, within AZOBR_RS30120at 97.463 kb on - strand, within AZOBR_RS30120at 97.489 kb on + strand, within AZOBR_RS30120at 97.489 kb on + strand, within AZOBR_RS30120at 97.489 kb on + strand, within AZOBR_RS30120at 97.490 kb on - strand, within AZOBR_RS30120at 97.490 kb on - strand, within AZOBR_RS30120at 97.657 kb on + strand, within AZOBR_RS30120at 97.657 kb on + strand, within AZOBR_RS30120at 97.657 kb on + strand, within AZOBR_RS30120at 97.657 kb on + strand, within AZOBR_RS30120at 97.658 kb on - strand, within AZOBR_RS30120at 97.658 kb on - strand, within AZOBR_RS30120at 97.658 kb on - strand, within AZOBR_RS30120at 97.660 kb on + strand, within AZOBR_RS30120at 97.661 kb on - strand, within AZOBR_RS30120at 97.759 kb on + strand, within AZOBR_RS30120at 97.759 kb on + strand, within AZOBR_RS30120at 97.759 kb on + strand, within AZOBR_RS30120at 97.760 kb on - strand, within AZOBR_RS30120at 97.760 kb on - strand, within AZOBR_RS30120at 97.760 kb on - strand, within AZOBR_RS30120at 97.760 kb on - strand, within AZOBR_RS30120at 97.760 kb on - strand, within AZOBR_RS30120at 97.832 kb on - strand, within AZOBR_RS30120at 97.843 kb on + strand, within AZOBR_RS30120at 98.358 kb on + strand, within AZOBR_RS30125at 98.358 kb on + strand, within AZOBR_RS30125at 98.358 kb on + strand, within AZOBR_RS30125at 98.358 kb on + strand, within AZOBR_RS30125at 98.358 kb on + strand, within AZOBR_RS30125at 98.358 kb on + strand, within AZOBR_RS30125at 98.358 kb on + strand, within AZOBR_RS30125at 98.358 kb on + strand, within AZOBR_RS30125at 98.398 kb on - strand, within AZOBR_RS30125at 98.827 kb on + strandat 98.828 kb on - strandat 99.010 kb on + strand, within AZOBR_RS30130at 99.010 kb on + strand, within AZOBR_RS30130at 99.011 kb on - strand, within AZOBR_RS30130at 99.011 kb on - strand, within AZOBR_RS30130at 99.134 kb on - strand, within AZOBR_RS30130at 99.166 kb on + strand, within AZOBR_RS30130at 99.175 kb on + strand, within AZOBR_RS30130at 99.175 kb on + strand, within AZOBR_RS30130at 99.176 kb on - strand, within AZOBR_RS30130at 99.176 kb on - strand, within AZOBR_RS30130at 99.176 kb on - strand, within AZOBR_RS30130at 99.176 kb on - strand, within AZOBR_RS30130at 99.220 kb on + strand, within AZOBR_RS30130at 99.220 kb on + strand, within AZOBR_RS30130at 99.221 kb on - strand, within AZOBR_RS30130at 99.352 kb on + strand, within AZOBR_RS30130at 99.352 kb on + strand, within AZOBR_RS30130at 99.353 kb on - strand, within AZOBR_RS30130at 99.376 kb on + strand, within AZOBR_RS30130at 99.377 kb on - strand, within AZOBR_RS30130at 99.377 kb on - strand, within AZOBR_RS30130at 99.667 kb on + strand, within AZOBR_RS30130at 99.667 kb on + strand, within AZOBR_RS30130at 99.667 kb on + strand, within AZOBR_RS30130at 99.667 kb on + strand, within AZOBR_RS30130at 99.668 kb on - strand, within AZOBR_RS30130at 99.668 kb on - strand, within AZOBR_RS30130at 99.668 kb on - strand, within AZOBR_RS30130

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Per-strain Table

Position Strand Gene LocusTag Fraction 3-octanone 6.3476 mM
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97,346 - AZOBR_RS30120 0.31 +0.8
97,360 + AZOBR_RS30120 0.32 -0.5
97,360 + AZOBR_RS30120 0.32 -0.5
97,360 + AZOBR_RS30120 0.32 -0.0
97,360 + AZOBR_RS30120 0.32 -0.5
97,360 + AZOBR_RS30120 0.32 -0.5
97,360 + AZOBR_RS30120 0.32 +0.5
97,360 + AZOBR_RS30120 0.32 -0.2
97,360 + AZOBR_RS30120 0.32 -1.5
97,360 + AZOBR_RS30120 0.32 +0.3
97,361 - AZOBR_RS30120 0.32 +0.2
97,361 - AZOBR_RS30120 0.32 +0.4
97,361 - AZOBR_RS30120 0.32 -1.4
97,463 - AZOBR_RS30120 0.40 -2.0
97,463 - AZOBR_RS30120 0.40 -0.4
97,489 + AZOBR_RS30120 0.42 -0.6
97,489 + AZOBR_RS30120 0.42 -0.3
97,489 + AZOBR_RS30120 0.42 -0.2
97,490 - AZOBR_RS30120 0.42 -0.8
97,490 - AZOBR_RS30120 0.42 -0.8
97,657 + AZOBR_RS30120 0.55 -2.4
97,657 + AZOBR_RS30120 0.55 -0.0
97,657 + AZOBR_RS30120 0.55 +0.1
97,657 + AZOBR_RS30120 0.55 -1.2
97,658 - AZOBR_RS30120 0.55 +1.3
97,658 - AZOBR_RS30120 0.55 +1.1
97,658 - AZOBR_RS30120 0.55 -1.2
97,660 + AZOBR_RS30120 0.55 -0.4
97,661 - AZOBR_RS30120 0.56 +0.2
97,759 + AZOBR_RS30120 0.63 -0.6
97,759 + AZOBR_RS30120 0.63 +0.3
97,759 + AZOBR_RS30120 0.63 -0.1
97,760 - AZOBR_RS30120 0.63 +0.3
97,760 - AZOBR_RS30120 0.63 +0.3
97,760 - AZOBR_RS30120 0.63 +0.2
97,760 - AZOBR_RS30120 0.63 +0.2
97,760 - AZOBR_RS30120 0.63 +0.4
97,832 - AZOBR_RS30120 0.69 -0.0
97,843 + AZOBR_RS30120 0.70 -0.4
98,358 + AZOBR_RS30125 0.28 -0.3
98,358 + AZOBR_RS30125 0.28 -0.1
98,358 + AZOBR_RS30125 0.28 +0.0
98,358 + AZOBR_RS30125 0.28 -0.2
98,358 + AZOBR_RS30125 0.28 -0.6
98,358 + AZOBR_RS30125 0.28 -0.3
98,358 + AZOBR_RS30125 0.28 -1.2
98,358 + AZOBR_RS30125 0.28 +0.3
98,398 - AZOBR_RS30125 0.36 +0.1
98,827 + +0.8
98,828 - -0.1
99,010 + AZOBR_RS30130 0.19 +0.2
99,010 + AZOBR_RS30130 0.19 -0.4
99,011 - AZOBR_RS30130 0.19 -0.7
99,011 - AZOBR_RS30130 0.19 +0.1
99,134 - AZOBR_RS30130 0.32 +1.8
99,166 + AZOBR_RS30130 0.35 +1.8
99,175 + AZOBR_RS30130 0.36 +0.3
99,175 + AZOBR_RS30130 0.36 -0.2
99,176 - AZOBR_RS30130 0.36 +1.8
99,176 - AZOBR_RS30130 0.36 +0.8
99,176 - AZOBR_RS30130 0.36 -0.5
99,176 - AZOBR_RS30130 0.36 +0.1
99,220 + AZOBR_RS30130 0.41 -0.5
99,220 + AZOBR_RS30130 0.41 -1.2
99,221 - AZOBR_RS30130 0.41 -1.7
99,352 + AZOBR_RS30130 0.55 +0.4
99,352 + AZOBR_RS30130 0.55 -0.2
99,353 - AZOBR_RS30130 0.55 +0.8
99,376 + AZOBR_RS30130 0.57 -0.4
99,377 - AZOBR_RS30130 0.57 -1.2
99,377 - AZOBR_RS30130 0.57 +0.6
99,667 + AZOBR_RS30130 0.88 -0.5
99,667 + AZOBR_RS30130 0.88 -0.1
99,667 + AZOBR_RS30130 0.88 -0.0
99,667 + AZOBR_RS30130 0.88 -1.4
99,668 - AZOBR_RS30130 0.88 -0.8
99,668 - AZOBR_RS30130 0.88 -0.8
99,668 - AZOBR_RS30130 0.88 -0.2

Or see this region's nucleotide sequence