Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS23520

Experiment: 3-octanone 6.3476 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAZOBR_RS23515 and AZOBR_RS23520 are separated by 31 nucleotidesAZOBR_RS23520 and AZOBR_RS23525 are separated by 4 nucleotidesAZOBR_RS23525 and AZOBR_RS23530 are separated by 13 nucleotides AZOBR_RS23515: AZOBR_RS23515 - ABC transporter permease, at 305,137 to 305,799 _RS23515 AZOBR_RS23520: AZOBR_RS23520 - ABC transporter permease, at 305,831 to 306,493 _RS23520 AZOBR_RS23525: AZOBR_RS23525 - ABC transporter ATP-binding protein, at 306,498 to 307,307 _RS23525 AZOBR_RS23530: AZOBR_RS23530 - putative Major facilitator family transporter, at 307,321 to 308,514 _RS23530 Position (kb) 305 306 307Strain fitness (log2 ratio) -1 0 1at 304.851 kb on + strandat 305.335 kb on + strand, within AZOBR_RS23515at 305.335 kb on + strand, within AZOBR_RS23515at 305.335 kb on + strand, within AZOBR_RS23515at 305.335 kb on + strand, within AZOBR_RS23515at 305.335 kb on + strand, within AZOBR_RS23515at 305.335 kb on + strand, within AZOBR_RS23515at 305.335 kb on + strand, within AZOBR_RS23515at 305.335 kb on + strand, within AZOBR_RS23515at 305.335 kb on + strand, within AZOBR_RS23515at 305.335 kb on + strand, within AZOBR_RS23515at 305.335 kb on + strand, within AZOBR_RS23515at 305.336 kb on - strand, within AZOBR_RS23515at 305.336 kb on - strand, within AZOBR_RS23515at 305.336 kb on - strand, within AZOBR_RS23515at 305.336 kb on - strand, within AZOBR_RS23515at 305.336 kb on - strand, within AZOBR_RS23515at 305.336 kb on - strand, within AZOBR_RS23515at 305.336 kb on - strand, within AZOBR_RS23515at 305.336 kb on - strand, within AZOBR_RS23515at 305.336 kb on - strand, within AZOBR_RS23515at 305.380 kb on + strand, within AZOBR_RS23515at 305.380 kb on + strand, within AZOBR_RS23515at 305.380 kb on + strand, within AZOBR_RS23515at 305.380 kb on + strand, within AZOBR_RS23515at 305.381 kb on - strand, within AZOBR_RS23515at 305.381 kb on - strand, within AZOBR_RS23515at 305.381 kb on - strand, within AZOBR_RS23515at 305.381 kb on - strand, within AZOBR_RS23515at 305.381 kb on - strand, within AZOBR_RS23515at 305.383 kb on + strand, within AZOBR_RS23515at 305.384 kb on - strand, within AZOBR_RS23515at 305.618 kb on - strand, within AZOBR_RS23515at 305.618 kb on - strand, within AZOBR_RS23515at 305.987 kb on + strand, within AZOBR_RS23520at 305.987 kb on + strand, within AZOBR_RS23520at 305.988 kb on - strand, within AZOBR_RS23520at 305.988 kb on - strand, within AZOBR_RS23520at 305.988 kb on - strand, within AZOBR_RS23520at 306.006 kb on - strand, within AZOBR_RS23520at 306.125 kb on + strand, within AZOBR_RS23520at 306.125 kb on + strand, within AZOBR_RS23520at 306.125 kb on + strand, within AZOBR_RS23520at 306.125 kb on + strand, within AZOBR_RS23520at 306.126 kb on - strand, within AZOBR_RS23520at 306.126 kb on - strand, within AZOBR_RS23520at 306.126 kb on - strand, within AZOBR_RS23520at 306.137 kb on + strand, within AZOBR_RS23520at 306.137 kb on + strand, within AZOBR_RS23520at 306.137 kb on + strand, within AZOBR_RS23520at 306.137 kb on + strand, within AZOBR_RS23520at 306.138 kb on - strand, within AZOBR_RS23520at 306.219 kb on - strand, within AZOBR_RS23520at 306.398 kb on + strand, within AZOBR_RS23520at 306.399 kb on - strand, within AZOBR_RS23520at 306.419 kb on + strand, within AZOBR_RS23520at 306.419 kb on + strand, within AZOBR_RS23520at 306.419 kb on + strand, within AZOBR_RS23520at 306.420 kb on - strand, within AZOBR_RS23520at 306.420 kb on - strand, within AZOBR_RS23520at 306.420 kb on - strand, within AZOBR_RS23520at 306.420 kb on - strand, within AZOBR_RS23520at 306.492 kb on - strandat 306.519 kb on + strandat 306.520 kb on - strandat 306.909 kb on + strand, within AZOBR_RS23525at 307.489 kb on + strand, within AZOBR_RS23530at 307.490 kb on - strand, within AZOBR_RS23530

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 3-octanone 6.3476 mM
remove
304,851 + +0.2
305,335 + AZOBR_RS23515 0.30 +0.8
305,335 + AZOBR_RS23515 0.30 +0.4
305,335 + AZOBR_RS23515 0.30 -0.3
305,335 + AZOBR_RS23515 0.30 -1.3
305,335 + AZOBR_RS23515 0.30 -0.4
305,335 + AZOBR_RS23515 0.30 +0.0
305,335 + AZOBR_RS23515 0.30 -0.3
305,335 + AZOBR_RS23515 0.30 -0.1
305,335 + AZOBR_RS23515 0.30 +0.1
305,335 + AZOBR_RS23515 0.30 +0.8
305,335 + AZOBR_RS23515 0.30 +1.4
305,336 - AZOBR_RS23515 0.30 +1.3
305,336 - AZOBR_RS23515 0.30 +0.5
305,336 - AZOBR_RS23515 0.30 -0.5
305,336 - AZOBR_RS23515 0.30 -0.2
305,336 - AZOBR_RS23515 0.30 -0.3
305,336 - AZOBR_RS23515 0.30 +0.8
305,336 - AZOBR_RS23515 0.30 -0.4
305,336 - AZOBR_RS23515 0.30 -0.2
305,336 - AZOBR_RS23515 0.30 -0.4
305,380 + AZOBR_RS23515 0.37 -0.3
305,380 + AZOBR_RS23515 0.37 -0.1
305,380 + AZOBR_RS23515 0.37 -0.1
305,380 + AZOBR_RS23515 0.37 +1.6
305,381 - AZOBR_RS23515 0.37 -0.2
305,381 - AZOBR_RS23515 0.37 +0.2
305,381 - AZOBR_RS23515 0.37 +0.1
305,381 - AZOBR_RS23515 0.37 -0.1
305,381 - AZOBR_RS23515 0.37 +0.9
305,383 + AZOBR_RS23515 0.37 +0.2
305,384 - AZOBR_RS23515 0.37 +0.4
305,618 - AZOBR_RS23515 0.73 +0.6
305,618 - AZOBR_RS23515 0.73 -0.8
305,987 + AZOBR_RS23520 0.24 -0.0
305,987 + AZOBR_RS23520 0.24 +0.6
305,988 - AZOBR_RS23520 0.24 -0.1
305,988 - AZOBR_RS23520 0.24 +0.4
305,988 - AZOBR_RS23520 0.24 +0.1
306,006 - AZOBR_RS23520 0.26 -0.7
306,125 + AZOBR_RS23520 0.44 +0.1
306,125 + AZOBR_RS23520 0.44 -0.7
306,125 + AZOBR_RS23520 0.44 -0.1
306,125 + AZOBR_RS23520 0.44 +0.6
306,126 - AZOBR_RS23520 0.44 +0.2
306,126 - AZOBR_RS23520 0.44 -0.5
306,126 - AZOBR_RS23520 0.44 +0.1
306,137 + AZOBR_RS23520 0.46 +0.4
306,137 + AZOBR_RS23520 0.46 +1.1
306,137 + AZOBR_RS23520 0.46 -0.9
306,137 + AZOBR_RS23520 0.46 +0.3
306,138 - AZOBR_RS23520 0.46 -0.5
306,219 - AZOBR_RS23520 0.59 +1.0
306,398 + AZOBR_RS23520 0.86 +0.1
306,399 - AZOBR_RS23520 0.86 -0.0
306,419 + AZOBR_RS23520 0.89 -0.2
306,419 + AZOBR_RS23520 0.89 -0.1
306,419 + AZOBR_RS23520 0.89 -0.2
306,420 - AZOBR_RS23520 0.89 +1.2
306,420 - AZOBR_RS23520 0.89 -0.7
306,420 - AZOBR_RS23520 0.89 +0.1
306,420 - AZOBR_RS23520 0.89 +0.1
306,492 - -0.9
306,519 + +0.3
306,520 - -0.2
306,909 + AZOBR_RS23525 0.51 -0.8
307,489 + AZOBR_RS23530 0.14 +0.7
307,490 - AZOBR_RS23530 0.14 -1.4

Or see this region's nucleotide sequence