Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS22715

Experiment: 3-octanone 6.3476 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS22710 and AZOBR_RS22715 are separated by 107 nucleotidesAZOBR_RS22715 and AZOBR_RS22720 are separated by 18 nucleotides AZOBR_RS22710: AZOBR_RS22710 - gluconolactonase, at 104,285 to 105,175 _RS22710 AZOBR_RS22715: AZOBR_RS22715 - C4-dicarboxylate ABC transporter permease, at 105,283 to 106,743 _RS22715 AZOBR_RS22720: AZOBR_RS22720 - hypothetical protein, at 106,762 to 107,220 _RS22720 Position (kb) 105 106 107Strain fitness (log2 ratio) -2 -1 0 1at 104.634 kb on + strand, within AZOBR_RS22710at 104.635 kb on - strand, within AZOBR_RS22710at 104.682 kb on + strand, within AZOBR_RS22710at 104.683 kb on - strand, within AZOBR_RS22710at 104.730 kb on + strand, within AZOBR_RS22710at 105.282 kb on - strandat 105.350 kb on + strandat 105.452 kb on + strand, within AZOBR_RS22715at 105.533 kb on + strand, within AZOBR_RS22715at 105.909 kb on - strand, within AZOBR_RS22715at 106.040 kb on + strand, within AZOBR_RS22715at 106.041 kb on - strand, within AZOBR_RS22715at 106.739 kb on + strandat 106.740 kb on - strandat 106.740 kb on - strandat 106.764 kb on - strandat 106.818 kb on - strand, within AZOBR_RS22720at 106.833 kb on - strand, within AZOBR_RS22720at 106.833 kb on - strand, within AZOBR_RS22720at 106.958 kb on + strand, within AZOBR_RS22720at 106.958 kb on + strand, within AZOBR_RS22720at 106.959 kb on - strand, within AZOBR_RS22720at 106.959 kb on - strand, within AZOBR_RS22720at 106.959 kb on - strand, within AZOBR_RS22720at 106.964 kb on + strand, within AZOBR_RS22720at 106.964 kb on + strand, within AZOBR_RS22720at 106.965 kb on - strand, within AZOBR_RS22720at 106.965 kb on - strand, within AZOBR_RS22720at 107.117 kb on + strand, within AZOBR_RS22720at 107.117 kb on + strand, within AZOBR_RS22720at 107.436 kb on + strandat 107.518 kb on + strandat 107.571 kb on + strandat 107.571 kb on + strandat 107.571 kb on + strandat 107.572 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 3-octanone 6.3476 mM
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104,634 + AZOBR_RS22710 0.39 -0.1
104,635 - AZOBR_RS22710 0.39 +0.5
104,682 + AZOBR_RS22710 0.45 -0.8
104,683 - AZOBR_RS22710 0.45 +0.8
104,730 + AZOBR_RS22710 0.50 -0.4
105,282 - +0.2
105,350 + +0.8
105,452 + AZOBR_RS22715 0.12 +0.8
105,533 + AZOBR_RS22715 0.17 -1.0
105,909 - AZOBR_RS22715 0.43 +0.0
106,040 + AZOBR_RS22715 0.52 +0.8
106,041 - AZOBR_RS22715 0.52 -0.9
106,739 + -0.4
106,740 - -2.3
106,740 - +0.4
106,764 - +0.2
106,818 - AZOBR_RS22720 0.12 -1.8
106,833 - AZOBR_RS22720 0.15 -0.2
106,833 - AZOBR_RS22720 0.15 -0.9
106,958 + AZOBR_RS22720 0.43 -0.5
106,958 + AZOBR_RS22720 0.43 -0.3
106,959 - AZOBR_RS22720 0.43 -0.7
106,959 - AZOBR_RS22720 0.43 -0.9
106,959 - AZOBR_RS22720 0.43 -1.6
106,964 + AZOBR_RS22720 0.44 +0.6
106,964 + AZOBR_RS22720 0.44 +1.0
106,965 - AZOBR_RS22720 0.44 -0.1
106,965 - AZOBR_RS22720 0.44 -1.3
107,117 + AZOBR_RS22720 0.77 +0.3
107,117 + AZOBR_RS22720 0.77 +0.7
107,436 + -0.8
107,518 + -0.5
107,571 + +1.7
107,571 + -1.6
107,571 + -0.0
107,572 - +1.1

Or see this region's nucleotide sequence