Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS22165

Experiment: 3-octanone 6.3476 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAZOBR_RS22160 and AZOBR_RS22165 are separated by 101 nucleotidesAZOBR_RS22165 and AZOBR_RS22170 are separated by 839 nucleotides AZOBR_RS22160: AZOBR_RS22160 - hypothetical protein, at 1,743,918 to 1,746,569 _RS22160 AZOBR_RS22165: AZOBR_RS22165 - peptidylprolyl isomerase, at 1,746,671 to 1,747,222 _RS22165 AZOBR_RS22170: AZOBR_RS22170 - hypothetical protein, at 1,748,062 to 1,748,901 _RS22170 Position (kb) 1746 1747 1748Strain fitness (log2 ratio) -1 0 1at 1745.734 kb on - strand, within AZOBR_RS22160at 1745.779 kb on - strand, within AZOBR_RS22160at 1745.779 kb on - strand, within AZOBR_RS22160at 1745.779 kb on - strand, within AZOBR_RS22160at 1745.779 kb on - strand, within AZOBR_RS22160at 1746.182 kb on + strand, within AZOBR_RS22160at 1746.304 kb on - strandat 1746.342 kb on + strandat 1746.363 kb on + strandat 1746.364 kb on - strandat 1746.366 kb on + strandat 1746.367 kb on - strandat 1746.367 kb on - strandat 1746.367 kb on - strandat 1746.672 kb on + strandat 1746.805 kb on - strand, within AZOBR_RS22165at 1746.805 kb on - strand, within AZOBR_RS22165at 1746.805 kb on - strand, within AZOBR_RS22165at 1747.026 kb on + strand, within AZOBR_RS22165at 1747.027 kb on - strand, within AZOBR_RS22165at 1747.125 kb on + strand, within AZOBR_RS22165at 1747.125 kb on + strand, within AZOBR_RS22165at 1747.126 kb on - strand, within AZOBR_RS22165at 1747.126 kb on - strand, within AZOBR_RS22165at 1747.126 kb on - strand, within AZOBR_RS22165at 1747.392 kb on + strandat 1747.393 kb on - strandat 1747.393 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 3-octanone 6.3476 mM
remove
1,745,734 - AZOBR_RS22160 0.68 +0.5
1,745,779 - AZOBR_RS22160 0.70 +0.4
1,745,779 - AZOBR_RS22160 0.70 +0.0
1,745,779 - AZOBR_RS22160 0.70 +0.9
1,745,779 - AZOBR_RS22160 0.70 +0.7
1,746,182 + AZOBR_RS22160 0.85 -1.5
1,746,304 - +1.3
1,746,342 + -0.9
1,746,363 + -0.2
1,746,364 - -0.5
1,746,366 + +1.1
1,746,367 - +1.2
1,746,367 - -0.6
1,746,367 - +0.9
1,746,672 + +0.9
1,746,805 - AZOBR_RS22165 0.24 -0.9
1,746,805 - AZOBR_RS22165 0.24 +0.2
1,746,805 - AZOBR_RS22165 0.24 +0.2
1,747,026 + AZOBR_RS22165 0.64 -0.2
1,747,027 - AZOBR_RS22165 0.64 +0.3
1,747,125 + AZOBR_RS22165 0.82 +0.5
1,747,125 + AZOBR_RS22165 0.82 +0.1
1,747,126 - AZOBR_RS22165 0.82 -0.2
1,747,126 - AZOBR_RS22165 0.82 +0.1
1,747,126 - AZOBR_RS22165 0.82 -0.6
1,747,392 + -0.8
1,747,393 - +0.0
1,747,393 - +0.1

Or see this region's nucleotide sequence