Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS16330

Experiment: 3-octanone 6.3476 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS16325 and AZOBR_RS16330 are separated by 124 nucleotidesAZOBR_RS16330 and AZOBR_RS16335 are separated by 22 nucleotidesAZOBR_RS16335 and AZOBR_RS16340 are separated by 124 nucleotides AZOBR_RS16325: AZOBR_RS16325 - short-chain dehydrogenase, at 411,256 to 412,017 _RS16325 AZOBR_RS16330: AZOBR_RS16330 - hypothetical protein, at 412,142 to 413,008 _RS16330 AZOBR_RS16335: AZOBR_RS16335 - guanylate kinase, at 413,031 to 413,666 _RS16335 AZOBR_RS16340: AZOBR_RS16340 - 16S rRNA methyltransferase, at 413,791 to 414,627 _RS16340 Position (kb) 412 413 414Strain fitness (log2 ratio) -2 -1 0 1at 411.245 kb on - strandat 411.533 kb on + strand, within AZOBR_RS16325at 412.067 kb on + strandat 412.069 kb on + strandat 412.069 kb on + strandat 412.095 kb on + strandat 413.792 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 3-octanone 6.3476 mM
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411,245 - +0.1
411,533 + AZOBR_RS16325 0.36 -0.4
412,067 + -0.2
412,069 + -0.4
412,069 + -1.8
412,095 + -0.3
413,792 + -0.8

Or see this region's nucleotide sequence