Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS12510

Experiment: 3-octanone 6.3476 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS12505 and AZOBR_RS12510 are separated by 243 nucleotidesAZOBR_RS12510 and AZOBR_RS12515 are separated by 506 nucleotides AZOBR_RS12505: AZOBR_RS12505 - hypothetical protein, at 2,634,339 to 2,636,513 _RS12505 AZOBR_RS12510: AZOBR_RS12510 - histidine kinase, at 2,636,757 to 2,638,172 _RS12510 AZOBR_RS12515: AZOBR_RS12515 - hypothetical protein, at 2,638,679 to 2,639,743 _RS12515 Position (kb) 2636 2637 2638 2639Strain fitness (log2 ratio) -1 0 1at 2635.813 kb on + strand, within AZOBR_RS12505at 2635.814 kb on - strand, within AZOBR_RS12505at 2635.870 kb on + strand, within AZOBR_RS12505at 2635.870 kb on + strand, within AZOBR_RS12505at 2635.870 kb on + strand, within AZOBR_RS12505at 2635.871 kb on - strand, within AZOBR_RS12505at 2635.882 kb on + strand, within AZOBR_RS12505at 2635.883 kb on - strand, within AZOBR_RS12505at 2635.883 kb on - strand, within AZOBR_RS12505at 2635.883 kb on - strand, within AZOBR_RS12505at 2635.883 kb on - strand, within AZOBR_RS12505at 2636.203 kb on - strand, within AZOBR_RS12505at 2636.566 kb on - strandat 2636.566 kb on - strandat 2636.566 kb on - strandat 2636.970 kb on - strand, within AZOBR_RS12510at 2638.287 kb on - strandat 2638.473 kb on + strandat 2638.608 kb on - strandat 2639.071 kb on + strand, within AZOBR_RS12515at 2639.071 kb on + strand, within AZOBR_RS12515

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Per-strain Table

Position Strand Gene LocusTag Fraction 3-octanone 6.3476 mM
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2,635,813 + AZOBR_RS12505 0.68 +0.5
2,635,814 - AZOBR_RS12505 0.68 +0.7
2,635,870 + AZOBR_RS12505 0.70 +0.6
2,635,870 + AZOBR_RS12505 0.70 -0.3
2,635,870 + AZOBR_RS12505 0.70 -0.7
2,635,871 - AZOBR_RS12505 0.70 -0.3
2,635,882 + AZOBR_RS12505 0.71 +0.3
2,635,883 - AZOBR_RS12505 0.71 +0.5
2,635,883 - AZOBR_RS12505 0.71 -0.2
2,635,883 - AZOBR_RS12505 0.71 +0.2
2,635,883 - AZOBR_RS12505 0.71 -0.4
2,636,203 - AZOBR_RS12505 0.86 +0.7
2,636,566 - +0.3
2,636,566 - +1.2
2,636,566 - -0.9
2,636,970 - AZOBR_RS12510 0.15 -1.5
2,638,287 - -0.9
2,638,473 + +1.1
2,638,608 - -1.4
2,639,071 + AZOBR_RS12515 0.37 +0.4
2,639,071 + AZOBR_RS12515 0.37 -0.5

Or see this region's nucleotide sequence