Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS18195

Experiment: 3-octanone 5.2896 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS18190 and AZOBR_RS18195 overlap by 4 nucleotidesAZOBR_RS18195 and AZOBR_RS18200 are separated by 100 nucleotides AZOBR_RS18190: AZOBR_RS18190 - hypothetical protein, at 839,592 to 840,293 _RS18190 AZOBR_RS18195: AZOBR_RS18195 - hypothetical protein, at 840,290 to 843,593 _RS18195 AZOBR_RS18200: AZOBR_RS18200 - hypothetical protein, at 843,694 to 846,412 _RS18200 Position (kb) 840 841 842 843 844Strain fitness (log2 ratio) -1 0 1at 839.381 kb on - strandat 839.427 kb on + strandat 839.591 kb on + strandat 841.727 kb on + strand, within AZOBR_RS18195at 841.727 kb on + strand, within AZOBR_RS18195at 842.437 kb on + strand, within AZOBR_RS18195at 842.438 kb on - strand, within AZOBR_RS18195at 842.438 kb on - strand, within AZOBR_RS18195at 842.666 kb on + strand, within AZOBR_RS18195at 842.666 kb on + strand, within AZOBR_RS18195at 842.879 kb on + strand, within AZOBR_RS18195at 842.879 kb on + strand, within AZOBR_RS18195at 842.879 kb on + strand, within AZOBR_RS18195at 842.879 kb on + strand, within AZOBR_RS18195at 842.879 kb on + strand, within AZOBR_RS18195at 842.879 kb on + strand, within AZOBR_RS18195at 842.880 kb on - strand, within AZOBR_RS18195at 843.342 kb on - strandat 843.342 kb on - strandat 844.058 kb on + strand, within AZOBR_RS18200at 844.059 kb on - strand, within AZOBR_RS18200at 844.581 kb on - strand, within AZOBR_RS18200

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Per-strain Table

Position Strand Gene LocusTag Fraction 3-octanone 5.2896 mM
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839,381 - +0.1
839,427 + -0.7
839,591 + -0.1
841,727 + AZOBR_RS18195 0.43 +0.1
841,727 + AZOBR_RS18195 0.43 -0.1
842,437 + AZOBR_RS18195 0.65 +0.1
842,438 - AZOBR_RS18195 0.65 -0.1
842,438 - AZOBR_RS18195 0.65 +0.6
842,666 + AZOBR_RS18195 0.72 +1.5
842,666 + AZOBR_RS18195 0.72 +0.8
842,879 + AZOBR_RS18195 0.78 -0.0
842,879 + AZOBR_RS18195 0.78 +0.2
842,879 + AZOBR_RS18195 0.78 +0.1
842,879 + AZOBR_RS18195 0.78 -0.6
842,879 + AZOBR_RS18195 0.78 +0.6
842,879 + AZOBR_RS18195 0.78 +0.7
842,880 - AZOBR_RS18195 0.78 +0.6
843,342 - -0.3
843,342 - -0.2
844,058 + AZOBR_RS18200 0.13 +0.8
844,059 - AZOBR_RS18200 0.13 -0.5
844,581 - AZOBR_RS18200 0.33 +0.1

Or see this region's nucleotide sequence