Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS16420

Experiment: 3-octanone 5.2896 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS16415 and AZOBR_RS16420 are separated by 63 nucleotidesAZOBR_RS16420 and AZOBR_RS16425 are separated by 217 nucleotides AZOBR_RS16415: AZOBR_RS16415 - hypothetical protein, at 431,555 to 432,139 _RS16415 AZOBR_RS16420: AZOBR_RS16420 - excinuclease ABC subunit B, at 432,203 to 434,341 _RS16420 AZOBR_RS16425: AZOBR_RS16425 - branched-chain amino acid aminotransferase, at 434,559 to 435,431 _RS16425 Position (kb) 432 433 434 435Strain fitness (log2 ratio) -2 -1 0 1 2at 431.345 kb on - strandat 431.345 kb on - strandat 431.373 kb on - strandat 431.402 kb on + strandat 431.403 kb on - strandat 431.409 kb on + strandat 431.409 kb on + strandat 431.420 kb on - strandat 431.459 kb on + strandat 431.465 kb on + strandat 431.631 kb on - strand, within AZOBR_RS16415at 431.789 kb on + strand, within AZOBR_RS16415at 431.790 kb on - strand, within AZOBR_RS16415at 431.790 kb on - strand, within AZOBR_RS16415at 432.060 kb on - strand, within AZOBR_RS16415at 432.487 kb on - strand, within AZOBR_RS16420at 432.555 kb on + strand, within AZOBR_RS16420at 432.601 kb on - strand, within AZOBR_RS16420at 432.630 kb on + strand, within AZOBR_RS16420at 432.705 kb on + strand, within AZOBR_RS16420at 432.705 kb on + strand, within AZOBR_RS16420at 432.848 kb on + strand, within AZOBR_RS16420at 432.848 kb on + strand, within AZOBR_RS16420at 432.849 kb on - strand, within AZOBR_RS16420at 432.864 kb on + strand, within AZOBR_RS16420at 432.864 kb on + strand, within AZOBR_RS16420at 432.865 kb on - strand, within AZOBR_RS16420at 432.894 kb on + strand, within AZOBR_RS16420at 432.895 kb on - strand, within AZOBR_RS16420at 433.197 kb on + strand, within AZOBR_RS16420at 433.236 kb on + strand, within AZOBR_RS16420at 433.236 kb on + strand, within AZOBR_RS16420at 433.236 kb on + strand, within AZOBR_RS16420at 433.236 kb on + strand, within AZOBR_RS16420at 433.236 kb on + strand, within AZOBR_RS16420at 433.237 kb on - strand, within AZOBR_RS16420at 433.353 kb on + strand, within AZOBR_RS16420at 433.363 kb on - strand, within AZOBR_RS16420at 433.542 kb on + strand, within AZOBR_RS16420at 433.542 kb on + strand, within AZOBR_RS16420at 433.542 kb on + strand, within AZOBR_RS16420at 433.542 kb on + strand, within AZOBR_RS16420at 433.542 kb on + strand, within AZOBR_RS16420at 433.542 kb on + strand, within AZOBR_RS16420at 433.542 kb on + strand, within AZOBR_RS16420at 433.543 kb on - strand, within AZOBR_RS16420at 433.543 kb on - strand, within AZOBR_RS16420at 433.543 kb on - strand, within AZOBR_RS16420at 433.558 kb on - strand, within AZOBR_RS16420at 433.746 kb on + strand, within AZOBR_RS16420at 433.746 kb on + strand, within AZOBR_RS16420at 433.747 kb on - strand, within AZOBR_RS16420at 433.747 kb on - strand, within AZOBR_RS16420at 433.828 kb on - strand, within AZOBR_RS16420at 433.851 kb on + strand, within AZOBR_RS16420at 433.852 kb on - strand, within AZOBR_RS16420at 433.852 kb on - strand, within AZOBR_RS16420at 434.382 kb on + strandat 434.382 kb on + strandat 434.382 kb on + strandat 434.383 kb on - strandat 434.383 kb on - strandat 434.384 kb on + strandat 434.384 kb on + strandat 434.384 kb on + strandat 434.384 kb on + strandat 434.385 kb on - strandat 434.385 kb on - strandat 434.480 kb on + strandat 434.480 kb on + strandat 434.481 kb on - strandat 434.481 kb on - strandat 434.582 kb on - strandat 434.785 kb on - strand, within AZOBR_RS16425at 434.896 kb on + strand, within AZOBR_RS16425at 434.941 kb on + strand, within AZOBR_RS16425at 434.941 kb on + strand, within AZOBR_RS16425at 434.942 kb on - strand, within AZOBR_RS16425at 434.942 kb on - strand, within AZOBR_RS16425at 435.046 kb on + strand, within AZOBR_RS16425at 435.047 kb on - strand, within AZOBR_RS16425at 435.145 kb on + strand, within AZOBR_RS16425at 435.146 kb on - strand, within AZOBR_RS16425at 435.146 kb on - strand, within AZOBR_RS16425at 435.146 kb on - strand, within AZOBR_RS16425at 435.146 kb on - strand, within AZOBR_RS16425at 435.146 kb on - strand, within AZOBR_RS16425at 435.293 kb on - strand, within AZOBR_RS16425

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Per-strain Table

Position Strand Gene LocusTag Fraction 3-octanone 5.2896 mM
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431,345 - -0.3
431,345 - -0.2
431,373 - -0.1
431,402 + -0.2
431,403 - -1.5
431,409 + +0.2
431,409 + +2.2
431,420 - +0.1
431,459 + -0.6
431,465 + -0.0
431,631 - AZOBR_RS16415 0.13 +2.2
431,789 + AZOBR_RS16415 0.40 +0.5
431,790 - AZOBR_RS16415 0.40 +2.2
431,790 - AZOBR_RS16415 0.40 -1.4
432,060 - AZOBR_RS16415 0.86 +0.7
432,487 - AZOBR_RS16420 0.13 -0.1
432,555 + AZOBR_RS16420 0.16 +2.6
432,601 - AZOBR_RS16420 0.19 -0.2
432,630 + AZOBR_RS16420 0.20 -1.3
432,705 + AZOBR_RS16420 0.23 +1.2
432,705 + AZOBR_RS16420 0.23 +2.2
432,848 + AZOBR_RS16420 0.30 +0.8
432,848 + AZOBR_RS16420 0.30 -1.6
432,849 - AZOBR_RS16420 0.30 -0.2
432,864 + AZOBR_RS16420 0.31 +1.2
432,864 + AZOBR_RS16420 0.31 -1.0
432,865 - AZOBR_RS16420 0.31 -0.1
432,894 + AZOBR_RS16420 0.32 -0.1
432,895 - AZOBR_RS16420 0.32 -0.7
433,197 + AZOBR_RS16420 0.46 -1.1
433,236 + AZOBR_RS16420 0.48 -0.1
433,236 + AZOBR_RS16420 0.48 -0.6
433,236 + AZOBR_RS16420 0.48 +0.3
433,236 + AZOBR_RS16420 0.48 +0.5
433,236 + AZOBR_RS16420 0.48 -0.1
433,237 - AZOBR_RS16420 0.48 -0.1
433,353 + AZOBR_RS16420 0.54 +1.5
433,363 - AZOBR_RS16420 0.54 -0.9
433,542 + AZOBR_RS16420 0.63 -0.4
433,542 + AZOBR_RS16420 0.63 -0.7
433,542 + AZOBR_RS16420 0.63 -0.4
433,542 + AZOBR_RS16420 0.63 +0.0
433,542 + AZOBR_RS16420 0.63 -0.2
433,542 + AZOBR_RS16420 0.63 -0.6
433,542 + AZOBR_RS16420 0.63 -0.6
433,543 - AZOBR_RS16420 0.63 -1.3
433,543 - AZOBR_RS16420 0.63 -0.4
433,543 - AZOBR_RS16420 0.63 +2.2
433,558 - AZOBR_RS16420 0.63 -1.5
433,746 + AZOBR_RS16420 0.72 +1.2
433,746 + AZOBR_RS16420 0.72 +0.2
433,747 - AZOBR_RS16420 0.72 +0.2
433,747 - AZOBR_RS16420 0.72 -1.3
433,828 - AZOBR_RS16420 0.76 +0.3
433,851 + AZOBR_RS16420 0.77 -0.7
433,852 - AZOBR_RS16420 0.77 -1.0
433,852 - AZOBR_RS16420 0.77 +1.5
434,382 + +1.0
434,382 + -0.3
434,382 + +0.1
434,383 - +0.6
434,383 - +0.6
434,384 + -1.9
434,384 + +0.3
434,384 + +0.4
434,384 + +0.2
434,385 - -0.3
434,385 - -0.6
434,480 + +0.4
434,480 + -0.4
434,481 - +0.0
434,481 - +1.5
434,582 - -0.5
434,785 - AZOBR_RS16425 0.26 -0.9
434,896 + AZOBR_RS16425 0.39 +0.9
434,941 + AZOBR_RS16425 0.44 -0.7
434,941 + AZOBR_RS16425 0.44 +0.3
434,942 - AZOBR_RS16425 0.44 -0.5
434,942 - AZOBR_RS16425 0.44 -0.8
435,046 + AZOBR_RS16425 0.56 -0.4
435,047 - AZOBR_RS16425 0.56 +0.1
435,145 + AZOBR_RS16425 0.67 +0.1
435,146 - AZOBR_RS16425 0.67 +0.1
435,146 - AZOBR_RS16425 0.67 -0.5
435,146 - AZOBR_RS16425 0.67 +0.7
435,146 - AZOBR_RS16425 0.67 -0.6
435,146 - AZOBR_RS16425 0.67 -0.4
435,293 - AZOBR_RS16425 0.84 +0.0

Or see this region's nucleotide sequence