Experiment: 3-octanone 5.2896 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS03065 and AZOBR_RS03070 are separated by 89 nucleotides AZOBR_RS03070 and AZOBR_RS03075 are separated by 169 nucleotides AZOBR_RS03075 and AZOBR_RS03080 are separated by 141 nucleotides AZOBR_RS03080 and AZOBR_RS03085 are separated by 272 nucleotides
AZOBR_RS03065: AZOBR_RS03065 - pirin, at 655,250 to 656,152
_RS03065
AZOBR_RS03070: AZOBR_RS03070 - hypothetical protein, at 656,242 to 656,520
_RS03070
AZOBR_RS03075: AZOBR_RS03075 - tRNA-Ala, at 656,690 to 656,765
_RS03075
AZOBR_RS03080: AZOBR_RS03080 - hypothetical protein, at 656,907 to 657,305
_RS03080
AZOBR_RS03085: AZOBR_RS03085 - gamma-glutamyltransferase, at 657,578 to 659,302
_RS03085
Position (kb) 656
657
658 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 655.920 kb on + strand, within AZOBR_RS03065 at 655.920 kb on + strand, within AZOBR_RS03065 at 656.725 kb on - strand, within AZOBR_RS03075 at 657.248 kb on - strand, within AZOBR_RS03080 at 657.248 kb on - strand at 657.248 kb on - strand, within AZOBR_RS03080 at 657.251 kb on - strand, within AZOBR_RS03080 at 657.487 kb on - strand at 657.495 kb on - strand at 657.703 kb on + strand at 657.860 kb on + strand, within AZOBR_RS03085 at 657.968 kb on + strand, within AZOBR_RS03085 at 657.968 kb on + strand, within AZOBR_RS03085 at 657.968 kb on + strand, within AZOBR_RS03085 at 658.178 kb on + strand, within AZOBR_RS03085 at 658.178 kb on + strand, within AZOBR_RS03085 at 658.286 kb on + strand, within AZOBR_RS03085
Per-strain Table
Position Strand Gene LocusTag Fraction 3-octanone 5.2896 mM remove 655,920 + AZOBR_RS03065 0.74 -0.1 655,920 + AZOBR_RS03065 0.74 +0.6 656,725 - AZOBR_RS03075 0.46 -0.4 657,248 - AZOBR_RS03080 0.85 -0.4 657,248 - +2.1 657,248 - AZOBR_RS03080 0.85 -2.0 657,251 - AZOBR_RS03080 0.86 -1.6 657,487 - -0.6 657,495 - +0.6 657,703 + +0.3 657,860 + AZOBR_RS03085 0.16 +1.5 657,968 + AZOBR_RS03085 0.23 +0.6 657,968 + AZOBR_RS03085 0.23 +0.3 657,968 + AZOBR_RS03085 0.23 +0.3 658,178 + AZOBR_RS03085 0.35 -0.6 658,178 + AZOBR_RS03085 0.35 -0.3 658,286 + AZOBR_RS03085 0.41 +3.1
Or see this region's nucleotide sequence