Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS26605

Experiment: 3-octanone 5.2896 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS26595 and AZOBR_RS26600 overlap by 4 nucleotidesAZOBR_RS26600 and AZOBR_RS26605 overlap by 4 nucleotidesAZOBR_RS26605 and AZOBR_RS26610 are separated by 159 nucleotides AZOBR_RS26595: AZOBR_RS26595 - membrane protein, at 110,751 to 112,298 _RS26595 AZOBR_RS26600: AZOBR_RS26600 - membrane protein, at 112,295 to 112,585 _RS26600 AZOBR_RS26605: AZOBR_RS26605 - TonB-denpendent receptor, at 112,582 to 115,071 _RS26605 AZOBR_RS26610: AZOBR_RS26610 - iron dicitrate transport regulator FecR, at 115,231 to 116,274 _RS26610 Position (kb) 112 113 114 115 116Strain fitness (log2 ratio) -2 -1 0 1 2at 111.667 kb on + strand, within AZOBR_RS26595at 111.667 kb on + strand, within AZOBR_RS26595at 111.667 kb on + strand, within AZOBR_RS26595at 111.667 kb on + strand, within AZOBR_RS26595at 111.668 kb on - strand, within AZOBR_RS26595at 111.668 kb on - strand, within AZOBR_RS26595at 111.668 kb on - strand, within AZOBR_RS26595at 111.668 kb on - strand, within AZOBR_RS26595at 111.716 kb on - strand, within AZOBR_RS26595at 111.878 kb on - strand, within AZOBR_RS26595at 111.919 kb on + strand, within AZOBR_RS26595at 111.919 kb on + strand, within AZOBR_RS26595at 111.919 kb on + strand, within AZOBR_RS26595at 111.920 kb on - strand, within AZOBR_RS26595at 111.923 kb on - strand, within AZOBR_RS26595at 112.008 kb on + strand, within AZOBR_RS26595at 112.008 kb on + strand, within AZOBR_RS26595at 112.030 kb on + strand, within AZOBR_RS26595at 112.030 kb on + strand, within AZOBR_RS26595at 112.031 kb on - strand, within AZOBR_RS26595at 112.195 kb on + strandat 112.195 kb on + strandat 112.196 kb on - strandat 112.196 kb on - strandat 112.298 kb on + strandat 112.298 kb on + strandat 112.593 kb on - strandat 112.593 kb on - strandat 112.629 kb on - strandat 112.629 kb on - strandat 112.631 kb on + strandat 112.632 kb on - strandat 112.632 kb on - strandat 112.664 kb on + strandat 112.664 kb on + strandat 112.664 kb on + strandat 112.665 kb on - strandat 112.730 kb on + strandat 112.731 kb on - strandat 112.731 kb on - strandat 112.805 kb on + strandat 112.805 kb on + strandat 112.806 kb on - strandat 112.821 kb on - strandat 112.874 kb on + strand, within AZOBR_RS26605at 112.874 kb on + strandat 112.875 kb on - strand, within AZOBR_RS26605at 112.875 kb on - strand, within AZOBR_RS26605at 112.973 kb on + strand, within AZOBR_RS26605at 112.974 kb on - strand, within AZOBR_RS26605at 113.063 kb on + strand, within AZOBR_RS26605at 113.064 kb on - strand, within AZOBR_RS26605at 113.064 kb on - strand, within AZOBR_RS26605at 113.064 kb on - strand, within AZOBR_RS26605at 113.157 kb on - strand, within AZOBR_RS26605at 113.175 kb on - strand, within AZOBR_RS26605at 113.259 kb on - strand, within AZOBR_RS26605at 113.285 kb on + strand, within AZOBR_RS26605at 113.286 kb on - strand, within AZOBR_RS26605at 113.433 kb on - strand, within AZOBR_RS26605at 113.595 kb on + strand, within AZOBR_RS26605at 113.723 kb on + strand, within AZOBR_RS26605at 113.756 kb on + strand, within AZOBR_RS26605at 113.924 kb on + strand, within AZOBR_RS26605at 113.924 kb on + strand, within AZOBR_RS26605at 113.924 kb on + strand, within AZOBR_RS26605at 113.925 kb on - strand, within AZOBR_RS26605at 113.925 kb on - strand, within AZOBR_RS26605at 113.960 kb on + strand, within AZOBR_RS26605at 114.204 kb on + strand, within AZOBR_RS26605at 114.205 kb on - strand, within AZOBR_RS26605at 114.205 kb on - strand, within AZOBR_RS26605at 114.205 kb on - strand, within AZOBR_RS26605at 114.205 kb on - strand, within AZOBR_RS26605at 114.350 kb on + strand, within AZOBR_RS26605at 114.350 kb on + strand, within AZOBR_RS26605at 114.351 kb on - strand, within AZOBR_RS26605at 114.351 kb on - strand, within AZOBR_RS26605at 114.351 kb on - strand, within AZOBR_RS26605at 114.464 kb on + strand, within AZOBR_RS26605at 114.464 kb on + strand, within AZOBR_RS26605at 114.464 kb on + strand, within AZOBR_RS26605at 114.465 kb on - strand, within AZOBR_RS26605at 114.465 kb on - strand, within AZOBR_RS26605at 114.465 kb on - strand, within AZOBR_RS26605at 114.597 kb on - strand, within AZOBR_RS26605at 114.597 kb on - strand, within AZOBR_RS26605at 114.713 kb on + strand, within AZOBR_RS26605at 114.960 kb on - strandat 115.050 kb on + strandat 115.246 kb on + strandat 115.397 kb on + strand, within AZOBR_RS26610at 115.397 kb on + strand, within AZOBR_RS26610at 115.622 kb on + strand, within AZOBR_RS26610at 115.622 kb on + strand, within AZOBR_RS26610at 115.623 kb on - strand, within AZOBR_RS26610

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Per-strain Table

Position Strand Gene LocusTag Fraction 3-octanone 5.2896 mM
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111,667 + AZOBR_RS26595 0.59 +0.8
111,667 + AZOBR_RS26595 0.59 +1.2
111,667 + AZOBR_RS26595 0.59 -0.9
111,667 + AZOBR_RS26595 0.59 -0.6
111,668 - AZOBR_RS26595 0.59 +0.4
111,668 - AZOBR_RS26595 0.59 -0.9
111,668 - AZOBR_RS26595 0.59 +0.0
111,668 - AZOBR_RS26595 0.59 -0.3
111,716 - AZOBR_RS26595 0.62 +0.3
111,878 - AZOBR_RS26595 0.73 +0.4
111,919 + AZOBR_RS26595 0.75 -0.3
111,919 + AZOBR_RS26595 0.75 -0.0
111,919 + AZOBR_RS26595 0.75 +0.3
111,920 - AZOBR_RS26595 0.76 +0.2
111,923 - AZOBR_RS26595 0.76 -0.8
112,008 + AZOBR_RS26595 0.81 +0.5
112,008 + AZOBR_RS26595 0.81 +0.1
112,030 + AZOBR_RS26595 0.83 +0.2
112,030 + AZOBR_RS26595 0.83 +0.0
112,031 - AZOBR_RS26595 0.83 +0.7
112,195 + -0.8
112,195 + -0.2
112,196 - +0.3
112,196 - -0.1
112,298 + -0.3
112,298 + -0.2
112,593 - +0.1
112,593 - -0.0
112,629 - +0.1
112,629 - -0.4
112,631 + +0.4
112,632 - -0.2
112,632 - -0.1
112,664 + +1.3
112,664 + +0.1
112,664 + +0.2
112,665 - +0.3
112,730 + -0.1
112,731 - -0.0
112,731 - +0.8
112,805 + -0.4
112,805 + -0.3
112,806 - +2.2
112,821 - +0.8
112,874 + AZOBR_RS26605 0.12 +0.1
112,874 + +1.4
112,875 - AZOBR_RS26605 0.12 -0.8
112,875 - AZOBR_RS26605 0.12 +1.4
112,973 + AZOBR_RS26605 0.16 -0.2
112,974 - AZOBR_RS26605 0.16 +0.4
113,063 + AZOBR_RS26605 0.19 -0.6
113,064 - AZOBR_RS26605 0.19 +0.1
113,064 - AZOBR_RS26605 0.19 -0.5
113,064 - AZOBR_RS26605 0.19 +0.0
113,157 - AZOBR_RS26605 0.23 +0.9
113,175 - AZOBR_RS26605 0.24 -0.5
113,259 - AZOBR_RS26605 0.27 -1.8
113,285 + AZOBR_RS26605 0.28 -0.3
113,286 - AZOBR_RS26605 0.28 -1.8
113,433 - AZOBR_RS26605 0.34 -1.0
113,595 + AZOBR_RS26605 0.41 -0.4
113,723 + AZOBR_RS26605 0.46 -1.1
113,756 + AZOBR_RS26605 0.47 -0.6
113,924 + AZOBR_RS26605 0.54 -0.7
113,924 + AZOBR_RS26605 0.54 -0.3
113,924 + AZOBR_RS26605 0.54 -1.2
113,925 - AZOBR_RS26605 0.54 +1.0
113,925 - AZOBR_RS26605 0.54 +1.4
113,960 + AZOBR_RS26605 0.55 +0.3
114,204 + AZOBR_RS26605 0.65 +0.0
114,205 - AZOBR_RS26605 0.65 +0.1
114,205 - AZOBR_RS26605 0.65 -0.8
114,205 - AZOBR_RS26605 0.65 -0.2
114,205 - AZOBR_RS26605 0.65 -0.3
114,350 + AZOBR_RS26605 0.71 +0.3
114,350 + AZOBR_RS26605 0.71 -0.0
114,351 - AZOBR_RS26605 0.71 -1.6
114,351 - AZOBR_RS26605 0.71 +0.5
114,351 - AZOBR_RS26605 0.71 +0.7
114,464 + AZOBR_RS26605 0.76 -0.7
114,464 + AZOBR_RS26605 0.76 +0.4
114,464 + AZOBR_RS26605 0.76 +1.4
114,465 - AZOBR_RS26605 0.76 +0.5
114,465 - AZOBR_RS26605 0.76 +1.0
114,465 - AZOBR_RS26605 0.76 +0.4
114,597 - AZOBR_RS26605 0.81 -1.1
114,597 - AZOBR_RS26605 0.81 -2.2
114,713 + AZOBR_RS26605 0.86 +0.3
114,960 - -2.1
115,050 + +0.5
115,246 + -1.6
115,397 + AZOBR_RS26610 0.16 -0.0
115,397 + AZOBR_RS26610 0.16 -0.1
115,622 + AZOBR_RS26610 0.37 -0.3
115,622 + AZOBR_RS26610 0.37 -0.8
115,623 - AZOBR_RS26610 0.38 -0.8

Or see this region's nucleotide sequence