Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS25620

Experiment: 3-octanone 5.2896 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS25615 and AZOBR_RS25620 are separated by 78 nucleotidesAZOBR_RS25620 and AZOBR_RS25625 are separated by 63 nucleotidesAZOBR_RS25625 and AZOBR_RS25630 are separated by 23 nucleotides AZOBR_RS25615: AZOBR_RS25615 - chemotaxis protein, at 795,711 to 797,153 _RS25615 AZOBR_RS25620: AZOBR_RS25620 - 2-amino-thiazoline-4-carboxylic acid hydrolase, at 797,232 to 797,696 _RS25620 AZOBR_RS25625: AZOBR_RS25625 - leucine/isoleucine/valine transporter ATP-binding subunit, at 797,760 to 798,458 _RS25625 AZOBR_RS25630: AZOBR_RS25630 - ABC transporter, at 798,482 to 799,249 _RS25630 Position (kb) 797 798Strain fitness (log2 ratio) -1 0 1at 796.588 kb on + strand, within AZOBR_RS25615at 796.589 kb on - strand, within AZOBR_RS25615at 797.645 kb on - strand, within AZOBR_RS25620at 797.782 kb on + strandat 797.783 kb on - strandat 797.783 kb on - strandat 798.501 kb on + strandat 798.501 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 3-octanone 5.2896 mM
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796,588 + AZOBR_RS25615 0.61 -0.1
796,589 - AZOBR_RS25615 0.61 -0.5
797,645 - AZOBR_RS25620 0.89 -0.0
797,782 + +0.2
797,783 - -0.8
797,783 - -0.6
798,501 + -0.1
798,501 + +0.4

Or see this region's nucleotide sequence