Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS21040

Experiment: 3-octanone 5.2896 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS21035 and AZOBR_RS21040 are separated by 55 nucleotidesAZOBR_RS21040 and AZOBR_RS21045 are separated by 26 nucleotidesAZOBR_RS21045 and AZOBR_RS21050 are separated by 3 nucleotides AZOBR_RS21035: AZOBR_RS21035 - gamma-glutamyltransferase, at 1,478,878 to 1,480,422 _RS21035 AZOBR_RS21040: AZOBR_RS21040 - hypothetical protein, at 1,480,478 to 1,481,515 _RS21040 AZOBR_RS21045: AZOBR_RS21045 - ABC transporter permease, at 1,481,542 to 1,482,315 _RS21045 AZOBR_RS21050: AZOBR_RS21050 - nitrate ABC transporter ATP-binding protein, at 1,482,319 to 1,483,161 _RS21050 Position (kb) 1480 1481 1482Strain fitness (log2 ratio) -2 -1 0 1at 1479.848 kb on + strand, within AZOBR_RS21035at 1479.848 kb on + strand, within AZOBR_RS21035at 1479.849 kb on - strand, within AZOBR_RS21035at 1480.016 kb on + strandat 1480.017 kb on - strand, within AZOBR_RS21035at 1480.095 kb on - strand, within AZOBR_RS21035at 1480.491 kb on + strandat 1480.491 kb on + strandat 1480.672 kb on - strand, within AZOBR_RS21040at 1480.899 kb on + strand, within AZOBR_RS21040at 1480.899 kb on + strand, within AZOBR_RS21040at 1480.900 kb on - strand, within AZOBR_RS21040at 1481.196 kb on + strand, within AZOBR_RS21040at 1481.358 kb on + strand, within AZOBR_RS21040at 1481.615 kb on + strandat 1481.615 kb on + strandat 1481.616 kb on - strandat 1481.616 kb on - strandat 1481.616 kb on - strandat 1481.616 kb on - strandat 1482.038 kb on + strand, within AZOBR_RS21045at 1482.039 kb on - strandat 1482.039 kb on - strand, within AZOBR_RS21045at 1482.039 kb on - strand, within AZOBR_RS21045at 1482.039 kb on - strand, within AZOBR_RS21045at 1482.039 kb on - strand, within AZOBR_RS21045at 1482.050 kb on + strand, within AZOBR_RS21045at 1482.100 kb on - strand, within AZOBR_RS21045at 1482.308 kb on + strandat 1482.309 kb on - strandat 1482.309 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 3-octanone 5.2896 mM
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1,479,848 + AZOBR_RS21035 0.63 -0.5
1,479,848 + AZOBR_RS21035 0.63 -0.5
1,479,849 - AZOBR_RS21035 0.63 -0.0
1,480,016 + +0.8
1,480,017 - AZOBR_RS21035 0.74 +0.2
1,480,095 - AZOBR_RS21035 0.79 -1.7
1,480,491 + +0.8
1,480,491 + -0.3
1,480,672 - AZOBR_RS21040 0.19 +0.3
1,480,899 + AZOBR_RS21040 0.41 -0.3
1,480,899 + AZOBR_RS21040 0.41 -0.4
1,480,900 - AZOBR_RS21040 0.41 -0.2
1,481,196 + AZOBR_RS21040 0.69 -1.5
1,481,358 + AZOBR_RS21040 0.85 +0.2
1,481,615 + +0.0
1,481,615 + -0.3
1,481,616 - +0.3
1,481,616 - -1.9
1,481,616 - +0.0
1,481,616 - +0.3
1,482,038 + AZOBR_RS21045 0.64 +0.5
1,482,039 - +1.4
1,482,039 - AZOBR_RS21045 0.64 +1.3
1,482,039 - AZOBR_RS21045 0.64 +1.1
1,482,039 - AZOBR_RS21045 0.64 +0.5
1,482,039 - AZOBR_RS21045 0.64 +1.3
1,482,050 + AZOBR_RS21045 0.66 -0.6
1,482,100 - AZOBR_RS21045 0.72 +0.2
1,482,308 + -0.4
1,482,309 - -0.3
1,482,309 - -2.0

Or see this region's nucleotide sequence