Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS14085

Experiment: 3-octanone 5.2896 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS14080 and AZOBR_RS14085 are separated by 138 nucleotides AZOBR_RS14080: AZOBR_RS14080 - dihydrolipoamide succinyltransferase, at 2,960,733 to 2,961,986 _RS14080 AZOBR_RS14085: AZOBR_RS14085 - histidine kinase, at 2,962,125 to 2,963,318 _RS14085 Position (kb) 2962 2963 2964Strain fitness (log2 ratio) -1 0 1at 2962.205 kb on + strandat 2962.206 kb on - strandat 2962.206 kb on - strandat 2962.206 kb on - strandat 2962.206 kb on - strandat 2962.206 kb on - strandat 2962.206 kb on - strandat 2963.365 kb on + strandat 2963.365 kb on + strandat 2963.366 kb on - strandat 2963.366 kb on - strandat 2963.489 kb on - strandat 2963.809 kb on + strandat 2963.809 kb on + strandat 2963.809 kb on + strandat 2963.809 kb on + strandat 2963.809 kb on + strandat 2963.810 kb on - strandat 2963.810 kb on - strandat 2963.810 kb on - strandat 2963.810 kb on - strandat 2963.896 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 3-octanone 5.2896 mM
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2,962,205 + +0.4
2,962,206 - +0.2
2,962,206 - +1.6
2,962,206 - +0.1
2,962,206 - -0.3
2,962,206 - +0.2
2,962,206 - +0.5
2,963,365 + -0.6
2,963,365 + +0.2
2,963,366 - -0.3
2,963,366 - -0.6
2,963,489 - +0.5
2,963,809 + -0.3
2,963,809 + -0.1
2,963,809 + +0.1
2,963,809 + +0.3
2,963,809 + +1.3
2,963,810 - -0.3
2,963,810 - -0.4
2,963,810 - +0.3
2,963,810 - +0.9
2,963,896 + +0.5

Or see this region's nucleotide sequence