Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS12835

Experiment: 3-octanone 5.2896 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS12830 and AZOBR_RS12835 are separated by 170 nucleotidesAZOBR_RS12835 and AZOBR_RS12840 are separated by 12 nucleotidesAZOBR_RS12840 and AZOBR_RS12845 are separated by 174 nucleotides AZOBR_RS12830: AZOBR_RS12830 - short-chain dehydrogenase, at 2,705,030 to 2,705,944 _RS12830 AZOBR_RS12835: AZOBR_RS12835 - RNA methyltransferase, at 2,706,115 to 2,706,993 _RS12835 AZOBR_RS12840: AZOBR_RS12840 - hypothetical protein, at 2,707,006 to 2,707,455 _RS12840 AZOBR_RS12845: AZOBR_RS12845 - methionine sulfoxide reductase A, at 2,707,630 to 2,708,262 _RS12845 Position (kb) 2706 2707Strain fitness (log2 ratio) -1 0 1at 2705.436 kb on + strand, within AZOBR_RS12830at 2705.660 kb on + strand, within AZOBR_RS12830at 2705.660 kb on + strand, within AZOBR_RS12830at 2705.660 kb on + strand, within AZOBR_RS12830at 2705.660 kb on + strand, within AZOBR_RS12830at 2705.697 kb on - strand, within AZOBR_RS12830at 2706.010 kb on - strandat 2706.019 kb on - strandat 2706.706 kb on + strand, within AZOBR_RS12835at 2706.706 kb on + strand, within AZOBR_RS12835at 2706.707 kb on - strand, within AZOBR_RS12835at 2707.238 kb on + strand, within AZOBR_RS12840at 2707.238 kb on + strand, within AZOBR_RS12840at 2707.572 kb on + strandat 2707.573 kb on - strandat 2707.879 kb on + strand, within AZOBR_RS12845at 2707.880 kb on - strand, within AZOBR_RS12845at 2707.934 kb on - strand, within AZOBR_RS12845at 2707.934 kb on - strand, within AZOBR_RS12845

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Per-strain Table

Position Strand Gene LocusTag Fraction 3-octanone 5.2896 mM
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2,705,436 + AZOBR_RS12830 0.44 +0.9
2,705,660 + AZOBR_RS12830 0.69 -0.4
2,705,660 + AZOBR_RS12830 0.69 -0.0
2,705,660 + AZOBR_RS12830 0.69 +0.5
2,705,660 + AZOBR_RS12830 0.69 -1.0
2,705,697 - AZOBR_RS12830 0.73 -0.7
2,706,010 - +0.4
2,706,019 - +0.3
2,706,706 + AZOBR_RS12835 0.67 +0.2
2,706,706 + AZOBR_RS12835 0.67 +0.6
2,706,707 - AZOBR_RS12835 0.67 +0.0
2,707,238 + AZOBR_RS12840 0.52 +0.6
2,707,238 + AZOBR_RS12840 0.52 +0.5
2,707,572 + -0.2
2,707,573 - +0.2
2,707,879 + AZOBR_RS12845 0.39 -0.9
2,707,880 - AZOBR_RS12845 0.39 +0.3
2,707,934 - AZOBR_RS12845 0.48 -0.7
2,707,934 - AZOBR_RS12845 0.48 +0.6

Or see this region's nucleotide sequence