Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS15495

Experiment: 3-octanone 5.2896 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAZOBR_RS15480 and AZOBR_RS15485 are separated by 22 nucleotidesAZOBR_RS15485 and AZOBR_RS15490 are separated by 48 nucleotidesAZOBR_RS15490 and AZOBR_RS15495 are separated by 99 nucleotidesAZOBR_RS15495 and AZOBR_RS15500 are separated by 426 nucleotides AZOBR_RS15480: AZOBR_RS15480 - preprotein translocase subunit TatC, at 231,763 to 232,566 _RS15480 AZOBR_RS15485: AZOBR_RS15485 - TatABCE protein translocation system subunit, at 232,589 to 233,116 _RS15485 AZOBR_RS15490: AZOBR_RS15490 - preprotein translocase, at 233,165 to 233,458 _RS15490 AZOBR_RS15495: AZOBR_RS15495 - ABC transporter ATPase, at 233,558 to 234,640 _RS15495 AZOBR_RS15500: AZOBR_RS15500 - segregation and condensation protein B, at 235,067 to 235,582 _RS15500 Position (kb) 233 234 235Strain fitness (log2 ratio) -2 -1 0 1at 233.559 kb on + strandat 233.964 kb on + strand, within AZOBR_RS15495at 233.965 kb on - strand, within AZOBR_RS15495at 233.965 kb on - strand, within AZOBR_RS15495at 234.935 kb on + strandat 234.935 kb on + strandat 234.936 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 3-octanone 5.2896 mM
remove
233,559 + +0.1
233,964 + AZOBR_RS15495 0.37 -0.6
233,965 - AZOBR_RS15495 0.38 -2.1
233,965 - AZOBR_RS15495 0.38 -0.6
234,935 + -0.0
234,935 + -0.1
234,936 - +0.1

Or see this region's nucleotide sequence