Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS15320

Experiment: 3-octanone 5.2896 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS15305 and AZOBR_RS15310 are separated by 84 nucleotidesAZOBR_RS15310 and AZOBR_RS15315 are separated by 135 nucleotidesAZOBR_RS15315 and AZOBR_RS15320 are separated by 21 nucleotidesAZOBR_RS15320 and AZOBR_RS15325 are separated by 199 nucleotides AZOBR_RS15305: AZOBR_RS15305 - putative phage integrase, at 198,109 to 199,200 _RS15305 AZOBR_RS15310: AZOBR_RS15310 - tRNA-Lys, at 199,285 to 199,360 _RS15310 AZOBR_RS15315: AZOBR_RS15315 - phosphopantetheine adenylyltransferase, at 199,496 to 200,044 _RS15315 AZOBR_RS15320: AZOBR_RS15320 - DNA gyrase subunit A, at 200,066 to 202,903 _RS15320 AZOBR_RS15325: AZOBR_RS15325 - multidrug transporter, at 203,103 to 204,482 _RS15325 Position (kb) 200 201 202 203Strain fitness (log2 ratio) -1 0 1at 202.981 kb on - strandat 203.272 kb on + strand, within AZOBR_RS15325at 203.425 kb on + strand, within AZOBR_RS15325at 203.426 kb on - strand, within AZOBR_RS15325at 203.426 kb on - strand, within AZOBR_RS15325at 203.458 kb on + strand, within AZOBR_RS15325at 203.548 kb on + strand, within AZOBR_RS15325at 203.822 kb on - strand, within AZOBR_RS15325at 203.822 kb on - strand, within AZOBR_RS15325

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Per-strain Table

Position Strand Gene LocusTag Fraction 3-octanone 5.2896 mM
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202,981 - +0.4
203,272 + AZOBR_RS15325 0.12 +0.5
203,425 + AZOBR_RS15325 0.23 +0.1
203,426 - AZOBR_RS15325 0.23 +1.0
203,426 - AZOBR_RS15325 0.23 -0.4
203,458 + AZOBR_RS15325 0.26 +0.1
203,548 + AZOBR_RS15325 0.32 -0.3
203,822 - AZOBR_RS15325 0.52 -0.5
203,822 - AZOBR_RS15325 0.52 -0.0

Or see this region's nucleotide sequence