Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS10730

Experiment: 3-octanone 5.2896 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS10725 and AZOBR_RS10730 are separated by 96 nucleotidesAZOBR_RS10730 and AZOBR_RS10735 are separated by 41 nucleotidesAZOBR_RS10735 and AZOBR_RS10740 are separated by 9 nucleotides AZOBR_RS10725: AZOBR_RS10725 - hypothetical protein, at 2,253,441 to 2,254,604 _RS10725 AZOBR_RS10730: AZOBR_RS10730 - chorismate synthase, at 2,254,701 to 2,255,777 _RS10730 AZOBR_RS10735: AZOBR_RS10735 - hypothetical protein, at 2,255,819 to 2,256,352 _RS10735 AZOBR_RS10740: AZOBR_RS10740 - regulator, at 2,256,362 to 2,257,456 _RS10740 Position (kb) 2254 2255 2256Strain fitness (log2 ratio) -2 -1 0 1at 2253.702 kb on + strand, within AZOBR_RS10725at 2253.702 kb on + strand, within AZOBR_RS10725at 2253.703 kb on - strand, within AZOBR_RS10725at 2253.703 kb on - strand, within AZOBR_RS10725at 2253.703 kb on - strand, within AZOBR_RS10725at 2253.703 kb on - strand, within AZOBR_RS10725at 2253.703 kb on - strand, within AZOBR_RS10725at 2253.750 kb on + strand, within AZOBR_RS10725at 2253.751 kb on - strand, within AZOBR_RS10725at 2254.167 kb on + strand, within AZOBR_RS10725at 2254.167 kb on + strand, within AZOBR_RS10725at 2254.167 kb on + strand, within AZOBR_RS10725at 2254.167 kb on + strand, within AZOBR_RS10725at 2254.167 kb on + strand, within AZOBR_RS10725at 2254.449 kb on + strand, within AZOBR_RS10725at 2254.525 kb on - strandat 2254.525 kb on - strandat 2254.602 kb on + strandat 2254.603 kb on - strandat 2254.603 kb on - strandat 2255.927 kb on + strand, within AZOBR_RS10735at 2255.928 kb on - strand, within AZOBR_RS10735at 2256.339 kb on + strandat 2256.340 kb on - strandat 2256.561 kb on + strand, within AZOBR_RS10740at 2256.562 kb on - strand, within AZOBR_RS10740

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Per-strain Table

Position Strand Gene LocusTag Fraction 3-octanone 5.2896 mM
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2,253,702 + AZOBR_RS10725 0.22 -0.1
2,253,702 + AZOBR_RS10725 0.22 +0.1
2,253,703 - AZOBR_RS10725 0.23 -0.4
2,253,703 - AZOBR_RS10725 0.23 -0.1
2,253,703 - AZOBR_RS10725 0.23 +0.1
2,253,703 - AZOBR_RS10725 0.23 -1.9
2,253,703 - AZOBR_RS10725 0.23 -0.6
2,253,750 + AZOBR_RS10725 0.27 +0.9
2,253,751 - AZOBR_RS10725 0.27 +0.5
2,254,167 + AZOBR_RS10725 0.62 +0.4
2,254,167 + AZOBR_RS10725 0.62 -0.5
2,254,167 + AZOBR_RS10725 0.62 +0.9
2,254,167 + AZOBR_RS10725 0.62 -0.2
2,254,167 + AZOBR_RS10725 0.62 -0.1
2,254,449 + AZOBR_RS10725 0.87 -0.5
2,254,525 - +0.9
2,254,525 - -0.4
2,254,602 + -1.3
2,254,603 - -0.1
2,254,603 - +0.9
2,255,927 + AZOBR_RS10735 0.20 -1.3
2,255,928 - AZOBR_RS10735 0.20 -0.4
2,256,339 + -0.3
2,256,340 - -1.1
2,256,561 + AZOBR_RS10740 0.18 +0.6
2,256,562 - AZOBR_RS10740 0.18 +0.9

Or see this region's nucleotide sequence