Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS09680

Experiment: 3-octanone 5.2896 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS09675 and AZOBR_RS09680 are separated by 57 nucleotidesAZOBR_RS09680 and AZOBR_RS09685 are separated by 305 nucleotides AZOBR_RS09675: AZOBR_RS09675 - glucosamine--fructose-6-phosphate aminotransferase, at 2,028,047 to 2,029,873 _RS09675 AZOBR_RS09680: AZOBR_RS09680 - N-acetylglucosamine-1-phosphate uridyltransferase, at 2,029,931 to 2,031,286 _RS09680 AZOBR_RS09685: AZOBR_RS09685 - phosphoglycolate phosphatase, at 2,031,592 to 2,032,272 _RS09685 Position (kb) 2029 2030 2031 2032Strain fitness (log2 ratio) -1 0 1 2at 2031.303 kb on - strandat 2031.457 kb on + strandat 2031.457 kb on + strandat 2031.457 kb on + strandat 2031.458 kb on - strandat 2031.458 kb on - strandat 2031.458 kb on - strandat 2031.458 kb on - strandat 2031.489 kb on + strandat 2031.490 kb on - strandat 2031.490 kb on - strandat 2031.490 kb on - strandat 2031.542 kb on + strandat 2031.554 kb on + strandat 2031.842 kb on - strand, within AZOBR_RS09685at 2031.854 kb on - strand, within AZOBR_RS09685at 2032.132 kb on - strand, within AZOBR_RS09685at 2032.174 kb on + strand, within AZOBR_RS09685at 2032.174 kb on + strand, within AZOBR_RS09685at 2032.174 kb on + strand, within AZOBR_RS09685at 2032.175 kb on - strand, within AZOBR_RS09685at 2032.175 kb on - strand, within AZOBR_RS09685at 2032.175 kb on - strand, within AZOBR_RS09685at 2032.175 kb on - strand, within AZOBR_RS09685at 2032.175 kb on - strand, within AZOBR_RS09685at 2032.176 kb on - strand, within AZOBR_RS09685

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Per-strain Table

Position Strand Gene LocusTag Fraction 3-octanone 5.2896 mM
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2,031,303 - +0.5
2,031,457 + -0.9
2,031,457 + -1.0
2,031,457 + -0.9
2,031,458 - -0.4
2,031,458 - +0.7
2,031,458 - -0.5
2,031,458 - +0.3
2,031,489 + +0.1
2,031,490 - +0.0
2,031,490 - -0.2
2,031,490 - +0.2
2,031,542 + +2.0
2,031,554 + +0.2
2,031,842 - AZOBR_RS09685 0.37 -0.2
2,031,854 - AZOBR_RS09685 0.38 -0.1
2,032,132 - AZOBR_RS09685 0.79 +0.0
2,032,174 + AZOBR_RS09685 0.85 +0.3
2,032,174 + AZOBR_RS09685 0.85 -0.3
2,032,174 + AZOBR_RS09685 0.85 -0.1
2,032,175 - AZOBR_RS09685 0.86 +0.2
2,032,175 - AZOBR_RS09685 0.86 +0.0
2,032,175 - AZOBR_RS09685 0.86 -0.1
2,032,175 - AZOBR_RS09685 0.86 +0.4
2,032,175 - AZOBR_RS09685 0.86 -0.3
2,032,176 - AZOBR_RS09685 0.86 +1.2

Or see this region's nucleotide sequence