Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS09675

Experiment: 3-octanone 5.2896 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS09670 and AZOBR_RS09675 are separated by 85 nucleotidesAZOBR_RS09675 and AZOBR_RS09680 are separated by 57 nucleotides AZOBR_RS09670: AZOBR_RS09670 - hypothetical protein, at 2,027,431 to 2,027,961 _RS09670 AZOBR_RS09675: AZOBR_RS09675 - glucosamine--fructose-6-phosphate aminotransferase, at 2,028,047 to 2,029,873 _RS09675 AZOBR_RS09680: AZOBR_RS09680 - N-acetylglucosamine-1-phosphate uridyltransferase, at 2,029,931 to 2,031,286 _RS09680 Position (kb) 2028 2029 2030Strain fitness (log2 ratio) -2 -1 0 1 2at 2027.055 kb on - strandat 2027.102 kb on + strandat 2027.103 kb on - strandat 2027.245 kb on + strandat 2027.245 kb on + strandat 2027.246 kb on - strandat 2027.246 kb on - strandat 2027.273 kb on - strandat 2027.566 kb on + strand, within AZOBR_RS09670at 2027.567 kb on - strand, within AZOBR_RS09670at 2027.900 kb on - strand, within AZOBR_RS09670

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Per-strain Table

Position Strand Gene LocusTag Fraction 3-octanone 5.2896 mM
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2,027,055 - -2.1
2,027,102 + +0.3
2,027,103 - +1.5
2,027,245 + +1.0
2,027,245 + +1.3
2,027,246 - +1.0
2,027,246 - -0.2
2,027,273 - -0.6
2,027,566 + AZOBR_RS09670 0.25 +0.9
2,027,567 - AZOBR_RS09670 0.26 +2.0
2,027,900 - AZOBR_RS09670 0.88 +0.1

Or see this region's nucleotide sequence