Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS06345

Experiment: 3-octanone 5.2896 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS06340 and AZOBR_RS06345 are separated by 77 nucleotidesAZOBR_RS06345 and AZOBR_RS06350 are separated by 292 nucleotides AZOBR_RS06340: AZOBR_RS06340 - acyl-CoA synthetase, at 1,342,618 to 1,344,540 _RS06340 AZOBR_RS06345: AZOBR_RS06345 - hypothetical protein, at 1,344,618 to 1,344,914 _RS06345 AZOBR_RS06350: AZOBR_RS06350 - thiosulfate sulfurtransferase, at 1,345,207 to 1,346,139 _RS06350 Position (kb) 1344 1345Strain fitness (log2 ratio) -1 0 1at 1343.692 kb on + strand, within AZOBR_RS06340at 1343.692 kb on + strand, within AZOBR_RS06340at 1343.693 kb on - strand, within AZOBR_RS06340at 1343.693 kb on - strand, within AZOBR_RS06340at 1343.693 kb on - strand, within AZOBR_RS06340at 1343.866 kb on + strand, within AZOBR_RS06340at 1343.866 kb on + strand, within AZOBR_RS06340at 1343.866 kb on + strand, within AZOBR_RS06340at 1343.867 kb on - strand, within AZOBR_RS06340at 1343.867 kb on - strand, within AZOBR_RS06340at 1343.867 kb on - strand, within AZOBR_RS06340at 1344.031 kb on + strand, within AZOBR_RS06340at 1344.032 kb on - strand, within AZOBR_RS06340at 1344.055 kb on + strand, within AZOBR_RS06340at 1344.056 kb on - strand, within AZOBR_RS06340at 1344.094 kb on + strand, within AZOBR_RS06340at 1344.094 kb on + strand, within AZOBR_RS06340at 1344.095 kb on - strand, within AZOBR_RS06340at 1344.100 kb on + strand, within AZOBR_RS06340at 1344.100 kb on + strand, within AZOBR_RS06340at 1344.101 kb on - strand, within AZOBR_RS06340at 1344.101 kb on - strand, within AZOBR_RS06340at 1344.101 kb on - strand, within AZOBR_RS06340at 1344.101 kb on - strand, within AZOBR_RS06340at 1344.442 kb on + strandat 1344.926 kb on + strandat 1344.926 kb on + strandat 1344.926 kb on + strandat 1345.378 kb on + strand, within AZOBR_RS06350at 1345.579 kb on + strand, within AZOBR_RS06350at 1345.579 kb on + strand, within AZOBR_RS06350at 1345.681 kb on + strand, within AZOBR_RS06350at 1345.681 kb on + strand, within AZOBR_RS06350at 1345.681 kb on + strand, within AZOBR_RS06350at 1345.682 kb on - strand, within AZOBR_RS06350at 1345.682 kb on - strand, within AZOBR_RS06350at 1345.682 kb on - strand, within AZOBR_RS06350at 1345.793 kb on - strand, within AZOBR_RS06350

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Per-strain Table

Position Strand Gene LocusTag Fraction 3-octanone 5.2896 mM
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1,343,692 + AZOBR_RS06340 0.56 -0.7
1,343,692 + AZOBR_RS06340 0.56 -0.5
1,343,693 - AZOBR_RS06340 0.56 -0.8
1,343,693 - AZOBR_RS06340 0.56 -0.7
1,343,693 - AZOBR_RS06340 0.56 -0.2
1,343,866 + AZOBR_RS06340 0.65 +0.4
1,343,866 + AZOBR_RS06340 0.65 -0.5
1,343,866 + AZOBR_RS06340 0.65 -0.5
1,343,867 - AZOBR_RS06340 0.65 -0.1
1,343,867 - AZOBR_RS06340 0.65 +1.0
1,343,867 - AZOBR_RS06340 0.65 -0.3
1,344,031 + AZOBR_RS06340 0.73 -0.3
1,344,032 - AZOBR_RS06340 0.74 -0.8
1,344,055 + AZOBR_RS06340 0.75 +0.9
1,344,056 - AZOBR_RS06340 0.75 -0.6
1,344,094 + AZOBR_RS06340 0.77 -0.3
1,344,094 + AZOBR_RS06340 0.77 +0.1
1,344,095 - AZOBR_RS06340 0.77 +1.3
1,344,100 + AZOBR_RS06340 0.77 +0.0
1,344,100 + AZOBR_RS06340 0.77 -0.8
1,344,101 - AZOBR_RS06340 0.77 -0.1
1,344,101 - AZOBR_RS06340 0.77 +1.0
1,344,101 - AZOBR_RS06340 0.77 +0.1
1,344,101 - AZOBR_RS06340 0.77 +0.3
1,344,442 + +0.0
1,344,926 + +0.9
1,344,926 + +0.3
1,344,926 + +0.8
1,345,378 + AZOBR_RS06350 0.18 -0.0
1,345,579 + AZOBR_RS06350 0.40 -0.3
1,345,579 + AZOBR_RS06350 0.40 -0.5
1,345,681 + AZOBR_RS06350 0.51 -0.1
1,345,681 + AZOBR_RS06350 0.51 -0.3
1,345,681 + AZOBR_RS06350 0.51 -0.3
1,345,682 - AZOBR_RS06350 0.51 -1.3
1,345,682 - AZOBR_RS06350 0.51 -0.6
1,345,682 - AZOBR_RS06350 0.51 +0.1
1,345,793 - AZOBR_RS06350 0.63 -0.1

Or see this region's nucleotide sequence