Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS12270

Experiment: 3-octanone 5.2896 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS12260 and AZOBR_RS12265 overlap by 4 nucleotidesAZOBR_RS12265 and AZOBR_RS12270 are separated by 7 nucleotidesAZOBR_RS12270 and AZOBR_RS00040 are separated by 103 nucleotides AZOBR_RS12260: AZOBR_RS12260 - elongation factor 3, at 2,575,114 to 2,576,940 _RS12260 AZOBR_RS12265: AZOBR_RS12265 - DMT transporter permease, at 2,576,937 to 2,577,815 _RS12265 AZOBR_RS12270: AZOBR_RS12270 - N-acetylmuramoyl-L-alanine amidase, at 2,577,823 to 2,578,533 _RS12270 AZOBR_RS00040: AZOBR_RS00040 - RNaseP_bact_a, at 2,578,637 to 2,578,982 _RS00040 Position (kb) 2577 2578 2579Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 2577.564 kb on + strand, within AZOBR_RS12265at 2577.564 kb on + strand, within AZOBR_RS12265at 2577.564 kb on + strand, within AZOBR_RS12265at 2577.565 kb on - strand, within AZOBR_RS12265at 2577.565 kb on - strand, within AZOBR_RS12265at 2577.565 kb on - strand, within AZOBR_RS12265at 2577.565 kb on - strand, within AZOBR_RS12265at 2577.565 kb on - strand, within AZOBR_RS12265at 2577.594 kb on + strand, within AZOBR_RS12265at 2577.594 kb on + strand, within AZOBR_RS12265at 2577.894 kb on - strand, within AZOBR_RS12270at 2577.916 kb on + strand, within AZOBR_RS12270at 2577.916 kb on + strand, within AZOBR_RS12270at 2577.916 kb on + strand, within AZOBR_RS12270at 2577.917 kb on - strand, within AZOBR_RS12270at 2578.015 kb on + strand, within AZOBR_RS12270at 2578.399 kb on + strand, within AZOBR_RS12270at 2579.106 kb on + strandat 2579.168 kb on + strandat 2579.169 kb on - strandat 2579.170 kb on + strandat 2579.283 kb on + strandat 2579.294 kb on + strandat 2579.294 kb on + strandat 2579.294 kb on + strandat 2579.294 kb on + strandat 2579.294 kb on + strandat 2579.295 kb on - strandat 2579.295 kb on - strandat 2579.295 kb on - strandat 2579.296 kb on + strandat 2579.296 kb on + strandat 2579.326 kb on + strandat 2579.326 kb on + strandat 2579.326 kb on + strandat 2579.327 kb on - strandat 2579.374 kb on - strandat 2579.374 kb on - strandat 2579.461 kb on + strandat 2579.461 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 3-octanone 5.2896 mM
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2,577,564 + AZOBR_RS12265 0.71 -0.8
2,577,564 + AZOBR_RS12265 0.71 -0.3
2,577,564 + AZOBR_RS12265 0.71 +1.0
2,577,565 - AZOBR_RS12265 0.71 -0.3
2,577,565 - AZOBR_RS12265 0.71 +0.6
2,577,565 - AZOBR_RS12265 0.71 -0.4
2,577,565 - AZOBR_RS12265 0.71 -0.4
2,577,565 - AZOBR_RS12265 0.71 -0.6
2,577,594 + AZOBR_RS12265 0.75 -1.5
2,577,594 + AZOBR_RS12265 0.75 -0.3
2,577,894 - AZOBR_RS12270 0.10 +1.0
2,577,916 + AZOBR_RS12270 0.13 -1.7
2,577,916 + AZOBR_RS12270 0.13 +0.5
2,577,916 + AZOBR_RS12270 0.13 -0.6
2,577,917 - AZOBR_RS12270 0.13 -0.8
2,578,015 + AZOBR_RS12270 0.27 -3.8
2,578,399 + AZOBR_RS12270 0.81 -0.0
2,579,106 + +0.2
2,579,168 + -1.5
2,579,169 - +0.3
2,579,170 + -0.4
2,579,283 + -0.0
2,579,294 + -0.4
2,579,294 + +0.4
2,579,294 + -0.8
2,579,294 + +1.0
2,579,294 + -0.8
2,579,295 - +0.1
2,579,295 - +2.0
2,579,295 - +0.6
2,579,296 + -2.2
2,579,296 + +0.0
2,579,326 + -0.9
2,579,326 + -0.4
2,579,326 + -1.4
2,579,327 - -0.5
2,579,374 - +0.1
2,579,374 - -0.0
2,579,461 + +1.0
2,579,461 + -0.9

Or see this region's nucleotide sequence