Experiment: 3-octanone 5.2896 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS04805 and AZOBR_RS04810 are separated by 60 nucleotides AZOBR_RS04810 and AZOBR_RS04815 are separated by 181 nucleotides
AZOBR_RS04805: AZOBR_RS04805 - dihydrolipoyllysine acetyltransferase, at 1,010,469 to 1,011,602
_RS04805
AZOBR_RS04810: AZOBR_RS04810 - shikimate 5-dehydrogenase, at 1,011,663 to 1,012,448
_RS04810
AZOBR_RS04815: AZOBR_RS04815 - radical SAM protein, at 1,012,630 to 1,013,547
_RS04815
Position (kb) 1011
1012
1013 Strain fitness (log2 ratio) -2
-1
0
1 at 1010.686 kb on - strand, within AZOBR_RS04805 at 1010.853 kb on + strand, within AZOBR_RS04805 at 1010.964 kb on + strand, within AZOBR_RS04805 at 1010.965 kb on - strand, within AZOBR_RS04805 at 1010.965 kb on - strand, within AZOBR_RS04805 at 1010.965 kb on - strand, within AZOBR_RS04805 at 1011.204 kb on + strand, within AZOBR_RS04805 at 1011.204 kb on + strand, within AZOBR_RS04805 at 1011.204 kb on + strand, within AZOBR_RS04805 at 1011.204 kb on + strand, within AZOBR_RS04805 at 1011.318 kb on + strand, within AZOBR_RS04805 at 1011.318 kb on + strand, within AZOBR_RS04805 at 1012.508 kb on + strand at 1012.508 kb on + strand at 1012.508 kb on + strand at 1013.186 kb on - strand, within AZOBR_RS04815 at 1013.186 kb on - strand at 1013.186 kb on - strand, within AZOBR_RS04815 at 1013.188 kb on + strand, within AZOBR_RS04815 at 1013.188 kb on + strand, within AZOBR_RS04815 at 1013.188 kb on + strand, within AZOBR_RS04815 at 1013.189 kb on - strand, within AZOBR_RS04815 at 1013.413 kb on + strand, within AZOBR_RS04815 at 1013.423 kb on + strand, within AZOBR_RS04815
Per-strain Table
Position Strand Gene LocusTag Fraction 3-octanone 5.2896 mM remove 1,010,686 - AZOBR_RS04805 0.19 -0.3 1,010,853 + AZOBR_RS04805 0.34 -1.9 1,010,964 + AZOBR_RS04805 0.44 -0.4 1,010,965 - AZOBR_RS04805 0.44 -0.0 1,010,965 - AZOBR_RS04805 0.44 -1.9 1,010,965 - AZOBR_RS04805 0.44 -0.6 1,011,204 + AZOBR_RS04805 0.65 -0.0 1,011,204 + AZOBR_RS04805 0.65 +0.1 1,011,204 + AZOBR_RS04805 0.65 -0.2 1,011,204 + AZOBR_RS04805 0.65 +0.1 1,011,318 + AZOBR_RS04805 0.75 -0.0 1,011,318 + AZOBR_RS04805 0.75 -1.0 1,012,508 + +0.3 1,012,508 + -0.7 1,012,508 + +0.2 1,013,186 - AZOBR_RS04815 0.61 -0.2 1,013,186 - +0.4 1,013,186 - AZOBR_RS04815 0.61 +1.7 1,013,188 + AZOBR_RS04815 0.61 +0.7 1,013,188 + AZOBR_RS04815 0.61 -0.5 1,013,188 + AZOBR_RS04815 0.61 -0.2 1,013,189 - AZOBR_RS04815 0.61 +0.2 1,013,413 + AZOBR_RS04815 0.85 -0.0 1,013,423 + AZOBR_RS04815 0.86 +0.1
Or see this region's nucleotide sequence