Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS18160

Experiment: 3-octanone 4.2317 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS18150 and AZOBR_RS18155 are separated by 61 nucleotidesAZOBR_RS18155 and AZOBR_RS18160 are separated by 70 nucleotidesAZOBR_RS18160 and AZOBR_RS18165 are separated by 46 nucleotides AZOBR_RS18150: AZOBR_RS18150 - membrane protein, at 829,837 to 830,988 _RS18150 AZOBR_RS18155: AZOBR_RS18155 - enoyl-CoA hydratase, at 831,050 to 831,796 _RS18155 AZOBR_RS18160: AZOBR_RS18160 - fumarylacetoacetate hydrolase, at 831,867 to 833,012 _RS18160 AZOBR_RS18165: AZOBR_RS18165 - 2 5-dioxovalerate dehydrogenase, at 833,059 to 834,639 _RS18165 Position (kb) 831 832 833 834Strain fitness (log2 ratio) -2 -1 0 1at 830.951 kb on - strandat 831.278 kb on + strand, within AZOBR_RS18155at 831.278 kb on + strand, within AZOBR_RS18155at 831.278 kb on + strand, within AZOBR_RS18155at 831.332 kb on + strand, within AZOBR_RS18155at 831.695 kb on + strand, within AZOBR_RS18155at 831.794 kb on + strandat 832.347 kb on + strand, within AZOBR_RS18160at 832.348 kb on - strand, within AZOBR_RS18160at 833.810 kb on - strand, within AZOBR_RS18165

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Per-strain Table

Position Strand Gene LocusTag Fraction 3-octanone 4.2317 mM
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830,951 - -0.6
831,278 + AZOBR_RS18155 0.31 +1.2
831,278 + AZOBR_RS18155 0.31 -0.5
831,278 + AZOBR_RS18155 0.31 +1.2
831,332 + AZOBR_RS18155 0.38 -0.4
831,695 + AZOBR_RS18155 0.86 -0.6
831,794 + -0.4
832,347 + AZOBR_RS18160 0.42 -1.3
832,348 - AZOBR_RS18160 0.42 -2.2
833,810 - AZOBR_RS18165 0.48 -0.5

Or see this region's nucleotide sequence