Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS12035

Experiment: 3-octanone 4.2317 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS12025 and AZOBR_RS12030 are separated by 126 nucleotidesAZOBR_RS12030 and AZOBR_RS12035 are separated by 36 nucleotidesAZOBR_RS12035 and AZOBR_RS12040 are separated by 186 nucleotidesAZOBR_RS12040 and AZOBR_RS12045 are separated by 191 nucleotides AZOBR_RS12025: AZOBR_RS12025 - 3-dehydroquinate dehydratase, at 2,527,023 to 2,527,472 _RS12025 AZOBR_RS12030: AZOBR_RS12030 - amino acid ABC transporter substrate-binding protein, at 2,527,599 to 2,528,378 _RS12030 AZOBR_RS12035: AZOBR_RS12035 - hypothetical protein, at 2,528,415 to 2,529,878 _RS12035 AZOBR_RS12040: AZOBR_RS12040 - hypothetical protein, at 2,530,065 to 2,530,616 _RS12040 AZOBR_RS12045: AZOBR_RS12045 - exported protein of unknown function, at 2,530,808 to 2,531,170 _RS12045 Position (kb) 2528 2529 2530Strain fitness (log2 ratio) -2 -1 0 1at 2527.557 kb on - strandat 2527.747 kb on + strand, within AZOBR_RS12030at 2528.020 kb on + strand, within AZOBR_RS12030at 2528.020 kb on + strand, within AZOBR_RS12030at 2528.020 kb on + strand, within AZOBR_RS12030at 2528.020 kb on + strand, within AZOBR_RS12030at 2528.020 kb on + strand, within AZOBR_RS12030at 2528.021 kb on - strand, within AZOBR_RS12030at 2528.093 kb on - strand, within AZOBR_RS12030at 2529.091 kb on + strand, within AZOBR_RS12035at 2529.091 kb on + strand, within AZOBR_RS12035at 2529.091 kb on + strand, within AZOBR_RS12035at 2529.100 kb on + strand, within AZOBR_RS12035at 2529.100 kb on + strand, within AZOBR_RS12035at 2529.100 kb on + strand, within AZOBR_RS12035at 2529.101 kb on - strand, within AZOBR_RS12035at 2529.208 kb on + strand, within AZOBR_RS12035at 2529.208 kb on + strand, within AZOBR_RS12035at 2529.208 kb on + strand, within AZOBR_RS12035at 2529.209 kb on - strand, within AZOBR_RS12035at 2529.209 kb on - strand, within AZOBR_RS12035at 2529.209 kb on - strand, within AZOBR_RS12035at 2529.452 kb on - strand, within AZOBR_RS12035at 2529.452 kb on - strand, within AZOBR_RS12035at 2529.511 kb on + strand, within AZOBR_RS12035at 2529.511 kb on + strand, within AZOBR_RS12035at 2529.939 kb on + strandat 2530.028 kb on - strandat 2530.221 kb on + strand, within AZOBR_RS12040at 2530.455 kb on + strand, within AZOBR_RS12040at 2530.455 kb on + strand, within AZOBR_RS12040at 2530.456 kb on - strand, within AZOBR_RS12040at 2530.729 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 3-octanone 4.2317 mM
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2,527,557 - -0.3
2,527,747 + AZOBR_RS12030 0.19 -0.2
2,528,020 + AZOBR_RS12030 0.54 -0.2
2,528,020 + AZOBR_RS12030 0.54 -0.7
2,528,020 + AZOBR_RS12030 0.54 +0.6
2,528,020 + AZOBR_RS12030 0.54 -0.4
2,528,020 + AZOBR_RS12030 0.54 -1.2
2,528,021 - AZOBR_RS12030 0.54 -0.9
2,528,093 - AZOBR_RS12030 0.63 -0.3
2,529,091 + AZOBR_RS12035 0.46 -0.3
2,529,091 + AZOBR_RS12035 0.46 -0.4
2,529,091 + AZOBR_RS12035 0.46 -1.0
2,529,100 + AZOBR_RS12035 0.47 -0.5
2,529,100 + AZOBR_RS12035 0.47 -1.0
2,529,100 + AZOBR_RS12035 0.47 -1.0
2,529,101 - AZOBR_RS12035 0.47 -0.7
2,529,208 + AZOBR_RS12035 0.54 +1.0
2,529,208 + AZOBR_RS12035 0.54 -0.7
2,529,208 + AZOBR_RS12035 0.54 -0.3
2,529,209 - AZOBR_RS12035 0.54 -0.2
2,529,209 - AZOBR_RS12035 0.54 +0.2
2,529,209 - AZOBR_RS12035 0.54 -0.1
2,529,452 - AZOBR_RS12035 0.71 -0.1
2,529,452 - AZOBR_RS12035 0.71 -0.2
2,529,511 + AZOBR_RS12035 0.75 +0.1
2,529,511 + AZOBR_RS12035 0.75 -0.7
2,529,939 + -0.2
2,530,028 - -1.0
2,530,221 + AZOBR_RS12040 0.28 -0.5
2,530,455 + AZOBR_RS12040 0.71 -0.2
2,530,455 + AZOBR_RS12040 0.71 +1.5
2,530,456 - AZOBR_RS12040 0.71 -1.2
2,530,729 - -1.9

Or see this region's nucleotide sequence