Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS13145

Experiment: 3-octanone 4.2317 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS13135 and AZOBR_RS13140 are separated by 72 nucleotidesAZOBR_RS13140 and AZOBR_RS13145 are separated by 28 nucleotidesAZOBR_RS13145 and AZOBR_RS13150 are separated by 39 nucleotides AZOBR_RS13135: AZOBR_RS13135 - hypothetical protein, at 2,772,228 to 2,772,440 _RS13135 AZOBR_RS13140: AZOBR_RS13140 - glyoxylate reductase (NADP+), at 2,772,513 to 2,773,172 _RS13140 AZOBR_RS13145: AZOBR_RS13145 - hypothetical protein, at 2,773,201 to 2,773,986 _RS13145 AZOBR_RS13150: AZOBR_RS13150 - ABC transporter substrate-binding protein, at 2,774,026 to 2,775,030 _RS13150 Position (kb) 2773 2774Strain fitness (log2 ratio) -1 0 1 2at 2772.419 kb on + strandat 2772.448 kb on + strandat 2772.448 kb on + strandat 2772.525 kb on + strandat 2772.526 kb on - strandat 2772.526 kb on - strandat 2772.529 kb on + strandat 2772.529 kb on + strandat 2772.529 kb on + strandat 2772.529 kb on + strandat 2772.530 kb on - strandat 2772.530 kb on - strandat 2772.530 kb on - strandat 2772.530 kb on - strandat 2772.530 kb on - strandat 2773.021 kb on - strand, within AZOBR_RS13140at 2773.119 kb on + strandat 2773.119 kb on + strandat 2773.119 kb on + strandat 2773.167 kb on + strandat 2773.331 kb on - strand, within AZOBR_RS13145at 2773.336 kb on + strand, within AZOBR_RS13145at 2773.337 kb on - strand, within AZOBR_RS13145at 2773.577 kb on - strand, within AZOBR_RS13145at 2773.642 kb on + strand, within AZOBR_RS13145at 2773.643 kb on - strand, within AZOBR_RS13145at 2773.643 kb on - strand, within AZOBR_RS13145at 2773.669 kb on + strand, within AZOBR_RS13145at 2773.670 kb on - strand, within AZOBR_RS13145at 2773.670 kb on - strand, within AZOBR_RS13145at 2773.670 kb on - strand, within AZOBR_RS13145at 2774.690 kb on - strand, within AZOBR_RS13150at 2774.690 kb on - strand, within AZOBR_RS13150at 2774.830 kb on + strand, within AZOBR_RS13150at 2774.830 kb on + strand, within AZOBR_RS13150at 2774.831 kb on - strand, within AZOBR_RS13150at 2774.831 kb on - strand, within AZOBR_RS13150at 2774.831 kb on - strand, within AZOBR_RS13150at 2774.831 kb on - strand, within AZOBR_RS13150at 2774.831 kb on - strand, within AZOBR_RS13150at 2774.831 kb on - strand, within AZOBR_RS13150at 2774.941 kb on + strandat 2774.941 kb on + strandat 2774.942 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 3-octanone 4.2317 mM
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2,772,419 + +0.8
2,772,448 + -0.6
2,772,448 + +0.2
2,772,525 + +0.2
2,772,526 - -0.5
2,772,526 - -1.1
2,772,529 + +0.7
2,772,529 + +0.1
2,772,529 + +0.2
2,772,529 + -0.1
2,772,530 - +0.2
2,772,530 - -0.3
2,772,530 - +1.8
2,772,530 - -0.3
2,772,530 - +0.5
2,773,021 - AZOBR_RS13140 0.77 -0.7
2,773,119 + -0.1
2,773,119 + -0.4
2,773,119 + +0.2
2,773,167 + +0.2
2,773,331 - AZOBR_RS13145 0.17 +2.0
2,773,336 + AZOBR_RS13145 0.17 -0.3
2,773,337 - AZOBR_RS13145 0.17 +0.6
2,773,577 - AZOBR_RS13145 0.48 -0.3
2,773,642 + AZOBR_RS13145 0.56 -0.2
2,773,643 - AZOBR_RS13145 0.56 +0.7
2,773,643 - AZOBR_RS13145 0.56 -0.3
2,773,669 + AZOBR_RS13145 0.60 +0.7
2,773,670 - AZOBR_RS13145 0.60 -0.5
2,773,670 - AZOBR_RS13145 0.60 -0.1
2,773,670 - AZOBR_RS13145 0.60 -0.2
2,774,690 - AZOBR_RS13150 0.66 -0.1
2,774,690 - AZOBR_RS13150 0.66 -0.1
2,774,830 + AZOBR_RS13150 0.80 -0.0
2,774,830 + AZOBR_RS13150 0.80 -0.2
2,774,831 - AZOBR_RS13150 0.80 -0.2
2,774,831 - AZOBR_RS13150 0.80 -0.1
2,774,831 - AZOBR_RS13150 0.80 +0.7
2,774,831 - AZOBR_RS13150 0.80 -0.1
2,774,831 - AZOBR_RS13150 0.80 -0.4
2,774,831 - AZOBR_RS13150 0.80 +0.9
2,774,941 + +1.0
2,774,941 + -0.4
2,774,942 - -0.6

Or see this region's nucleotide sequence