Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS23505

Experiment: 3-octanone 4.2317 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS23500 and AZOBR_RS23505 overlap by 4 nucleotidesAZOBR_RS23505 and AZOBR_RS23510 are separated by 35 nucleotides AZOBR_RS23500: AZOBR_RS23500 - transcriptional regulator IclR family, at 301,706 to 302,494 _RS23500 AZOBR_RS23505: AZOBR_RS23505 - N-formimino-L-glutamate deiminase, at 302,491 to 303,879 _RS23505 AZOBR_RS23510: AZOBR_RS23510 - N-formylglutamate amidohydrolase, at 303,915 to 304,715 _RS23510 Position (kb) 302 303 304Strain fitness (log2 ratio) -2 -1 0 1 2at 301.581 kb on - strandat 302.007 kb on + strand, within AZOBR_RS23500at 302.007 kb on + strand, within AZOBR_RS23500at 302.008 kb on - strand, within AZOBR_RS23500at 302.008 kb on - strand, within AZOBR_RS23500at 302.133 kb on + strand, within AZOBR_RS23500at 302.139 kb on + strand, within AZOBR_RS23500at 302.140 kb on - strand, within AZOBR_RS23500at 302.140 kb on - strand, within AZOBR_RS23500at 302.140 kb on - strand, within AZOBR_RS23500at 302.140 kb on - strand, within AZOBR_RS23500at 302.140 kb on - strand, within AZOBR_RS23500at 302.212 kb on - strand, within AZOBR_RS23500at 302.212 kb on - strand, within AZOBR_RS23500at 302.250 kb on + strand, within AZOBR_RS23500at 302.250 kb on + strand, within AZOBR_RS23500at 302.251 kb on - strand, within AZOBR_RS23500at 302.251 kb on - strand, within AZOBR_RS23500at 302.251 kb on - strand, within AZOBR_RS23500at 302.251 kb on - strand, within AZOBR_RS23500at 302.251 kb on - strand, within AZOBR_RS23500at 302.251 kb on - strand, within AZOBR_RS23500at 302.319 kb on + strand, within AZOBR_RS23500at 302.320 kb on - strand, within AZOBR_RS23500at 302.469 kb on + strandat 302.469 kb on + strandat 302.469 kb on + strandat 302.469 kb on + strandat 302.469 kb on + strandat 302.470 kb on - strandat 302.470 kb on - strandat 302.470 kb on - strandat 302.470 kb on - strandat 302.470 kb on - strandat 302.470 kb on - strandat 302.470 kb on - strandat 302.470 kb on - strandat 302.633 kb on + strand, within AZOBR_RS23505at 302.633 kb on + strand, within AZOBR_RS23505at 302.633 kb on + strand, within AZOBR_RS23505at 302.634 kb on - strand, within AZOBR_RS23505at 302.634 kb on - strand, within AZOBR_RS23505at 302.634 kb on - strandat 303.405 kb on - strand, within AZOBR_RS23505at 303.405 kb on - strand, within AZOBR_RS23505at 303.405 kb on - strand, within AZOBR_RS23505at 303.489 kb on - strand, within AZOBR_RS23505at 303.489 kb on - strand, within AZOBR_RS23505at 303.518 kb on + strand, within AZOBR_RS23505at 303.519 kb on - strand, within AZOBR_RS23505at 303.542 kb on + strand, within AZOBR_RS23505at 303.542 kb on + strand, within AZOBR_RS23505at 303.543 kb on - strand, within AZOBR_RS23505at 303.567 kb on - strand, within AZOBR_RS23505at 303.567 kb on - strand, within AZOBR_RS23505at 303.623 kb on + strand, within AZOBR_RS23505at 303.624 kb on - strand, within AZOBR_RS23505at 303.624 kb on - strand, within AZOBR_RS23505at 303.672 kb on - strand, within AZOBR_RS23505at 304.027 kb on + strand, within AZOBR_RS23510at 304.027 kb on + strand, within AZOBR_RS23510at 304.027 kb on + strand, within AZOBR_RS23510at 304.027 kb on + strand, within AZOBR_RS23510at 304.027 kb on + strand, within AZOBR_RS23510at 304.027 kb on + strand, within AZOBR_RS23510at 304.028 kb on - strand, within AZOBR_RS23510at 304.028 kb on - strand, within AZOBR_RS23510at 304.028 kb on - strand, within AZOBR_RS23510at 304.028 kb on - strand, within AZOBR_RS23510at 304.028 kb on - strand, within AZOBR_RS23510at 304.414 kb on + strand, within AZOBR_RS23510at 304.414 kb on + strand, within AZOBR_RS23510at 304.472 kb on - strand, within AZOBR_RS23510at 304.513 kb on + strand, within AZOBR_RS23510at 304.513 kb on + strand, within AZOBR_RS23510at 304.514 kb on - strand, within AZOBR_RS23510at 304.567 kb on + strand, within AZOBR_RS23510at 304.567 kb on + strand, within AZOBR_RS23510at 304.568 kb on - strand, within AZOBR_RS23510at 304.802 kb on + strandat 304.803 kb on - strandat 304.803 kb on - strandat 304.851 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 3-octanone 4.2317 mM
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301,581 - -0.1
302,007 + AZOBR_RS23500 0.38 +0.4
302,007 + AZOBR_RS23500 0.38 -0.3
302,008 - AZOBR_RS23500 0.38 -0.1
302,008 - AZOBR_RS23500 0.38 +0.1
302,133 + AZOBR_RS23500 0.54 +1.2
302,139 + AZOBR_RS23500 0.55 -1.0
302,140 - AZOBR_RS23500 0.55 +1.0
302,140 - AZOBR_RS23500 0.55 +0.3
302,140 - AZOBR_RS23500 0.55 +0.2
302,140 - AZOBR_RS23500 0.55 -0.3
302,140 - AZOBR_RS23500 0.55 +0.3
302,212 - AZOBR_RS23500 0.64 +0.0
302,212 - AZOBR_RS23500 0.64 -0.0
302,250 + AZOBR_RS23500 0.69 +0.1
302,250 + AZOBR_RS23500 0.69 +0.6
302,251 - AZOBR_RS23500 0.69 -0.2
302,251 - AZOBR_RS23500 0.69 +0.4
302,251 - AZOBR_RS23500 0.69 +0.6
302,251 - AZOBR_RS23500 0.69 -0.0
302,251 - AZOBR_RS23500 0.69 +0.4
302,251 - AZOBR_RS23500 0.69 -0.3
302,319 + AZOBR_RS23500 0.78 +0.4
302,320 - AZOBR_RS23500 0.78 +0.0
302,469 + +0.1
302,469 + +0.4
302,469 + -1.9
302,469 + +0.1
302,469 + +0.2
302,470 - +0.1
302,470 - +0.0
302,470 - +0.8
302,470 - +0.3
302,470 - +0.3
302,470 - +0.6
302,470 - -0.1
302,470 - -0.7
302,633 + AZOBR_RS23505 0.10 +0.9
302,633 + AZOBR_RS23505 0.10 -0.4
302,633 + AZOBR_RS23505 0.10 +1.5
302,634 - AZOBR_RS23505 0.10 -0.1
302,634 - AZOBR_RS23505 0.10 +0.3
302,634 - -0.6
303,405 - AZOBR_RS23505 0.66 +0.3
303,405 - AZOBR_RS23505 0.66 +0.2
303,405 - AZOBR_RS23505 0.66 -0.1
303,489 - AZOBR_RS23505 0.72 +0.8
303,489 - AZOBR_RS23505 0.72 +0.5
303,518 + AZOBR_RS23505 0.74 +0.7
303,519 - AZOBR_RS23505 0.74 +1.5
303,542 + AZOBR_RS23505 0.76 +0.1
303,542 + AZOBR_RS23505 0.76 -0.4
303,543 - AZOBR_RS23505 0.76 -0.0
303,567 - AZOBR_RS23505 0.77 -0.4
303,567 - AZOBR_RS23505 0.77 -0.5
303,623 + AZOBR_RS23505 0.81 -0.3
303,624 - AZOBR_RS23505 0.82 +0.1
303,624 - AZOBR_RS23505 0.82 +0.2
303,672 - AZOBR_RS23505 0.85 +0.1
304,027 + AZOBR_RS23510 0.14 +0.2
304,027 + AZOBR_RS23510 0.14 +0.2
304,027 + AZOBR_RS23510 0.14 +1.0
304,027 + AZOBR_RS23510 0.14 +0.2
304,027 + AZOBR_RS23510 0.14 -0.0
304,027 + AZOBR_RS23510 0.14 -0.0
304,028 - AZOBR_RS23510 0.14 +0.3
304,028 - AZOBR_RS23510 0.14 +0.1
304,028 - AZOBR_RS23510 0.14 -0.2
304,028 - AZOBR_RS23510 0.14 -0.0
304,028 - AZOBR_RS23510 0.14 +0.1
304,414 + AZOBR_RS23510 0.62 +1.4
304,414 + AZOBR_RS23510 0.62 -0.5
304,472 - AZOBR_RS23510 0.70 +0.3
304,513 + AZOBR_RS23510 0.75 -0.0
304,513 + AZOBR_RS23510 0.75 +2.0
304,514 - AZOBR_RS23510 0.75 +0.1
304,567 + AZOBR_RS23510 0.81 +0.5
304,567 + AZOBR_RS23510 0.81 +0.4
304,568 - AZOBR_RS23510 0.82 +1.0
304,802 + +0.1
304,803 - +0.5
304,803 - -0.1
304,851 + +0.3

Or see this region's nucleotide sequence