Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS05745

Experiment: 3-octanone 4.2317 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS05735 and AZOBR_RS05740 are separated by 285 nucleotidesAZOBR_RS05740 and AZOBR_RS05745 are separated by 6 nucleotidesAZOBR_RS05745 and AZOBR_RS05750 are separated by 197 nucleotidesAZOBR_RS05750 and AZOBR_RS05755 are separated by 306 nucleotides AZOBR_RS05735: AZOBR_RS05735 - 2-hydroxy-acid oxidase, at 1,215,711 to 1,217,057 _RS05735 AZOBR_RS05740: AZOBR_RS05740 - phosphatidylcholine synthase, at 1,217,343 to 1,218,038 _RS05740 AZOBR_RS05745: AZOBR_RS05745 - conserved exported protein of unknown function, at 1,218,045 to 1,218,320 _RS05745 AZOBR_RS05750: AZOBR_RS05750 - hypothetical protein, at 1,218,518 to 1,218,895 _RS05750 AZOBR_RS05755: AZOBR_RS05755 - Butyryl-CoA dehydrogenase (EC 1.3.8.1) (from data), at 1,219,202 to 1,221,001 _RS05755 Position (kb) 1218 1219Strain fitness (log2 ratio) -2 -1 0 1at 1217.055 kb on + strandat 1217.055 kb on + strandat 1217.268 kb on + strandat 1217.269 kb on - strandat 1217.571 kb on + strand, within AZOBR_RS05740at 1217.571 kb on + strand, within AZOBR_RS05740at 1217.572 kb on - strand, within AZOBR_RS05740at 1217.580 kb on + strand, within AZOBR_RS05740at 1217.580 kb on + strand, within AZOBR_RS05740at 1217.581 kb on - strand, within AZOBR_RS05740at 1217.581 kb on - strand, within AZOBR_RS05740at 1217.581 kb on - strand, within AZOBR_RS05740at 1217.581 kb on - strand, within AZOBR_RS05740at 1217.581 kb on - strand, within AZOBR_RS05740at 1217.608 kb on - strand, within AZOBR_RS05740at 1217.676 kb on + strand, within AZOBR_RS05740at 1217.677 kb on - strand, within AZOBR_RS05740at 1217.715 kb on + strand, within AZOBR_RS05740at 1217.715 kb on + strand, within AZOBR_RS05740at 1217.715 kb on + strand, within AZOBR_RS05740at 1217.715 kb on + strand, within AZOBR_RS05740at 1217.716 kb on - strand, within AZOBR_RS05740at 1217.716 kb on - strand, within AZOBR_RS05740at 1217.757 kb on + strand, within AZOBR_RS05740at 1217.757 kb on + strand, within AZOBR_RS05740at 1217.758 kb on - strand, within AZOBR_RS05740at 1217.985 kb on + strandat 1217.988 kb on + strandat 1217.988 kb on + strandat 1217.989 kb on - strandat 1218.036 kb on + strandat 1218.603 kb on + strand, within AZOBR_RS05750at 1218.603 kb on + strand, within AZOBR_RS05750at 1218.618 kb on + strand, within AZOBR_RS05750at 1218.738 kb on + strand, within AZOBR_RS05750at 1218.739 kb on - strand, within AZOBR_RS05750at 1218.739 kb on - strand, within AZOBR_RS05750

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Per-strain Table

Position Strand Gene LocusTag Fraction 3-octanone 4.2317 mM
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1,217,055 + +0.3
1,217,055 + -0.0
1,217,268 + -0.5
1,217,269 - -1.9
1,217,571 + AZOBR_RS05740 0.33 -0.1
1,217,571 + AZOBR_RS05740 0.33 -0.3
1,217,572 - AZOBR_RS05740 0.33 -0.0
1,217,580 + AZOBR_RS05740 0.34 +0.6
1,217,580 + AZOBR_RS05740 0.34 -0.3
1,217,581 - AZOBR_RS05740 0.34 -0.2
1,217,581 - AZOBR_RS05740 0.34 -0.3
1,217,581 - AZOBR_RS05740 0.34 +0.6
1,217,581 - AZOBR_RS05740 0.34 +0.2
1,217,581 - AZOBR_RS05740 0.34 -0.9
1,217,608 - AZOBR_RS05740 0.38 +0.2
1,217,676 + AZOBR_RS05740 0.48 +0.3
1,217,677 - AZOBR_RS05740 0.48 -0.6
1,217,715 + AZOBR_RS05740 0.53 +0.7
1,217,715 + AZOBR_RS05740 0.53 -0.2
1,217,715 + AZOBR_RS05740 0.53 -0.8
1,217,715 + AZOBR_RS05740 0.53 -0.3
1,217,716 - AZOBR_RS05740 0.54 +0.8
1,217,716 - AZOBR_RS05740 0.54 -0.1
1,217,757 + AZOBR_RS05740 0.59 -0.8
1,217,757 + AZOBR_RS05740 0.59 -0.8
1,217,758 - AZOBR_RS05740 0.60 +0.3
1,217,985 + -0.5
1,217,988 + -0.1
1,217,988 + +0.1
1,217,989 - -0.1
1,218,036 + -0.5
1,218,603 + AZOBR_RS05750 0.22 +0.2
1,218,603 + AZOBR_RS05750 0.22 -0.2
1,218,618 + AZOBR_RS05750 0.26 +0.2
1,218,738 + AZOBR_RS05750 0.58 -0.0
1,218,739 - AZOBR_RS05750 0.58 +0.7
1,218,739 - AZOBR_RS05750 0.58 -0.3

Or see this region's nucleotide sequence