Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS26065

Experiment: 2-pentyl-furan 1.335528 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS26060 and AZOBR_RS26065 are separated by 172 nucleotidesAZOBR_RS26065 and AZOBR_RS26070 are separated by 17 nucleotides AZOBR_RS26060: AZOBR_RS26060 - hypothetical protein, at 898,979 to 901,114 _RS26060 AZOBR_RS26065: AZOBR_RS26065 - hypothetical protein, at 901,287 to 903,059 _RS26065 AZOBR_RS26070: AZOBR_RS26070 - beta-glucosidase, at 903,077 to 904,384 _RS26070 Position (kb) 901 902 903 904Strain fitness (log2 ratio) -2 -1 0 1 2at 900.592 kb on - strand, within AZOBR_RS26060at 900.885 kb on + strand, within AZOBR_RS26060at 900.885 kb on + strand, within AZOBR_RS26060at 900.885 kb on + strand, within AZOBR_RS26060at 900.885 kb on + strand, within AZOBR_RS26060at 900.886 kb on - strand, within AZOBR_RS26060at 900.886 kb on - strand, within AZOBR_RS26060at 900.886 kb on - strand, within AZOBR_RS26060at 901.365 kb on + strandat 901.570 kb on - strand, within AZOBR_RS26065at 901.921 kb on - strand, within AZOBR_RS26065at 901.921 kb on - strand, within AZOBR_RS26065at 902.310 kb on + strand, within AZOBR_RS26065at 902.310 kb on + strand, within AZOBR_RS26065at 902.310 kb on + strand, within AZOBR_RS26065at 902.310 kb on + strand, within AZOBR_RS26065at 902.310 kb on + strand, within AZOBR_RS26065at 902.311 kb on - strand, within AZOBR_RS26065at 902.529 kb on + strand, within AZOBR_RS26065at 902.569 kb on - strand, within AZOBR_RS26065at 902.698 kb on + strand, within AZOBR_RS26065at 902.703 kb on + strand, within AZOBR_RS26065at 902.703 kb on + strand, within AZOBR_RS26065at 902.703 kb on + strand, within AZOBR_RS26065at 902.704 kb on - strand, within AZOBR_RS26065at 902.844 kb on + strand, within AZOBR_RS26065at 902.844 kb on + strand, within AZOBR_RS26065at 902.845 kb on - strand, within AZOBR_RS26065at 902.902 kb on + strandat 902.902 kb on + strandat 903.211 kb on - strand, within AZOBR_RS26070at 903.211 kb on - strand, within AZOBR_RS26070at 903.273 kb on + strand, within AZOBR_RS26070at 903.274 kb on - strand, within AZOBR_RS26070at 903.274 kb on - strand, within AZOBR_RS26070at 903.358 kb on - strand, within AZOBR_RS26070at 903.358 kb on - strand, within AZOBR_RS26070at 903.520 kb on - strand, within AZOBR_RS26070at 903.520 kb on - strandat 903.582 kb on + strand, within AZOBR_RS26070at 903.582 kb on + strand, within AZOBR_RS26070at 903.583 kb on - strand, within AZOBR_RS26070at 903.955 kb on - strand, within AZOBR_RS26070at 904.033 kb on - strand, within AZOBR_RS26070

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-pentyl-furan 1.335528 mM
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900,592 - AZOBR_RS26060 0.76 -0.6
900,885 + AZOBR_RS26060 0.89 +0.2
900,885 + AZOBR_RS26060 0.89 +0.2
900,885 + AZOBR_RS26060 0.89 +0.1
900,885 + AZOBR_RS26060 0.89 -1.1
900,886 - AZOBR_RS26060 0.89 -0.1
900,886 - AZOBR_RS26060 0.89 -1.6
900,886 - AZOBR_RS26060 0.89 +1.0
901,365 + -0.2
901,570 - AZOBR_RS26065 0.16 -0.7
901,921 - AZOBR_RS26065 0.36 -0.7
901,921 - AZOBR_RS26065 0.36 -0.4
902,310 + AZOBR_RS26065 0.58 -0.4
902,310 + AZOBR_RS26065 0.58 +0.2
902,310 + AZOBR_RS26065 0.58 -0.9
902,310 + AZOBR_RS26065 0.58 -0.6
902,310 + AZOBR_RS26065 0.58 +0.7
902,311 - AZOBR_RS26065 0.58 -0.5
902,529 + AZOBR_RS26065 0.70 +0.4
902,569 - AZOBR_RS26065 0.72 +1.7
902,698 + AZOBR_RS26065 0.80 +1.1
902,703 + AZOBR_RS26065 0.80 +0.2
902,703 + AZOBR_RS26065 0.80 -0.3
902,703 + AZOBR_RS26065 0.80 -0.9
902,704 - AZOBR_RS26065 0.80 -1.0
902,844 + AZOBR_RS26065 0.88 +2.2
902,844 + AZOBR_RS26065 0.88 -1.3
902,845 - AZOBR_RS26065 0.88 -0.8
902,902 + -2.1
902,902 + -0.7
903,211 - AZOBR_RS26070 0.10 -0.7
903,211 - AZOBR_RS26070 0.10 -0.4
903,273 + AZOBR_RS26070 0.15 +0.1
903,274 - AZOBR_RS26070 0.15 -1.1
903,274 - AZOBR_RS26070 0.15 +0.4
903,358 - AZOBR_RS26070 0.21 -0.5
903,358 - AZOBR_RS26070 0.21 -1.9
903,520 - AZOBR_RS26070 0.34 -1.0
903,520 - +1.2
903,582 + AZOBR_RS26070 0.39 +0.6
903,582 + AZOBR_RS26070 0.39 -0.6
903,583 - AZOBR_RS26070 0.39 -0.8
903,955 - AZOBR_RS26070 0.67 -0.3
904,033 - AZOBR_RS26070 0.73 -0.2

Or see this region's nucleotide sequence