Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS20045

Experiment: 2-pentyl-furan 1.335528 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS20040 and AZOBR_RS20045 are separated by 228 nucleotidesAZOBR_RS20045 and AZOBR_RS20050 are separated by 66 nucleotides AZOBR_RS20040: AZOBR_RS20040 - chemotaxis protein MotB, at 1,259,966 to 1,261,024 _RS20040 AZOBR_RS20045: AZOBR_RS20045 - flavin reductase, at 1,261,253 to 1,261,732 _RS20045 AZOBR_RS20050: AZOBR_RS20050 - putative protease-like protein, at 1,261,799 to 1,263,787 _RS20050 Position (kb) 1261 1262Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1260.294 kb on + strand, within AZOBR_RS20040at 1260.595 kb on - strand, within AZOBR_RS20040at 1261.102 kb on - strandat 1261.102 kb on - strandat 1261.112 kb on + strandat 1261.112 kb on + strandat 1261.113 kb on - strandat 1261.622 kb on + strand, within AZOBR_RS20045at 1261.623 kb on - strand, within AZOBR_RS20045at 1261.701 kb on - strandat 1261.701 kb on - strandat 1261.701 kb on - strandat 1261.800 kb on + strandat 1261.821 kb on + strandat 1261.822 kb on - strandat 1262.113 kb on - strand, within AZOBR_RS20050at 1262.113 kb on - strand, within AZOBR_RS20050at 1262.278 kb on - strand, within AZOBR_RS20050at 1262.278 kb on - strand, within AZOBR_RS20050at 1262.322 kb on + strand, within AZOBR_RS20050at 1262.322 kb on + strand, within AZOBR_RS20050at 1262.322 kb on + strand, within AZOBR_RS20050at 1262.322 kb on + strand, within AZOBR_RS20050at 1262.551 kb on - strand, within AZOBR_RS20050at 1262.551 kb on - strand, within AZOBR_RS20050at 1262.556 kb on + strand, within AZOBR_RS20050at 1262.557 kb on - strand, within AZOBR_RS20050at 1262.581 kb on - strand, within AZOBR_RS20050

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-pentyl-furan 1.335528 mM
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1,260,294 + AZOBR_RS20040 0.31 -4.7
1,260,595 - AZOBR_RS20040 0.59 +0.0
1,261,102 - +0.9
1,261,102 - +0.0
1,261,112 + -0.6
1,261,112 + +0.6
1,261,113 - +0.7
1,261,622 + AZOBR_RS20045 0.77 -0.6
1,261,623 - AZOBR_RS20045 0.77 +1.3
1,261,701 - +0.0
1,261,701 - -0.0
1,261,701 - +0.4
1,261,800 + -0.3
1,261,821 + -0.1
1,261,822 - -0.3
1,262,113 - AZOBR_RS20050 0.16 -0.8
1,262,113 - AZOBR_RS20050 0.16 +0.2
1,262,278 - AZOBR_RS20050 0.24 +0.1
1,262,278 - AZOBR_RS20050 0.24 -1.1
1,262,322 + AZOBR_RS20050 0.26 -1.0
1,262,322 + AZOBR_RS20050 0.26 -0.6
1,262,322 + AZOBR_RS20050 0.26 +1.0
1,262,322 + AZOBR_RS20050 0.26 +0.7
1,262,551 - AZOBR_RS20050 0.38 -0.1
1,262,551 - AZOBR_RS20050 0.38 +0.4
1,262,556 + AZOBR_RS20050 0.38 -1.2
1,262,557 - AZOBR_RS20050 0.38 +0.9
1,262,581 - AZOBR_RS20050 0.39 -0.6

Or see this region's nucleotide sequence