Experiment: 2-pentyl-furan 1.335528 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS18640 and AZOBR_RS18645 are separated by 165 nucleotides AZOBR_RS18645 and AZOBR_RS18650 overlap by 16 nucleotides AZOBR_RS18650 and AZOBR_RS18655 are separated by 175 nucleotides
AZOBR_RS18640: AZOBR_RS18640 - LysR family transcriptional regulator, at 952,996 to 953,913
_RS18640
AZOBR_RS18645: AZOBR_RS18645 - cysteine desulfurase, at 954,079 to 955,281
_RS18645
AZOBR_RS18650: AZOBR_RS18650 - 5-hydroxyisourate hydrolase, at 955,266 to 955,628
_RS18650
AZOBR_RS18655: AZOBR_RS18655 - OHCU decarboxylase, at 955,804 to 956,316
_RS18655
Position (kb) 954
955
956 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 953.118 kb on - strand, within AZOBR_RS18640 at 953.420 kb on + strand, within AZOBR_RS18640 at 954.166 kb on + strand at 954.167 kb on - strand at 954.167 kb on - strand at 954.167 kb on - strand at 954.167 kb on - strand at 954.260 kb on - strand, within AZOBR_RS18645 at 954.274 kb on + strand, within AZOBR_RS18645 at 954.274 kb on + strand, within AZOBR_RS18645 at 954.275 kb on - strand, within AZOBR_RS18645 at 954.331 kb on + strand, within AZOBR_RS18645 at 954.331 kb on + strand, within AZOBR_RS18645 at 954.332 kb on - strand, within AZOBR_RS18645 at 954.332 kb on - strand, within AZOBR_RS18645 at 954.373 kb on + strand, within AZOBR_RS18645 at 954.374 kb on - strand, within AZOBR_RS18645 at 954.376 kb on + strand, within AZOBR_RS18645 at 954.394 kb on + strand, within AZOBR_RS18645 at 954.394 kb on + strand, within AZOBR_RS18645 at 954.394 kb on + strand, within AZOBR_RS18645 at 954.394 kb on + strand, within AZOBR_RS18645 at 954.394 kb on + strand, within AZOBR_RS18645 at 954.394 kb on + strand, within AZOBR_RS18645 at 954.395 kb on - strand, within AZOBR_RS18645 at 954.395 kb on - strand, within AZOBR_RS18645 at 954.395 kb on - strand at 954.395 kb on - strand, within AZOBR_RS18645 at 954.760 kb on + strand, within AZOBR_RS18645 at 954.760 kb on + strand, within AZOBR_RS18645 at 954.760 kb on + strand, within AZOBR_RS18645 at 954.761 kb on - strand, within AZOBR_RS18645 at 954.826 kb on + strand, within AZOBR_RS18645 at 954.826 kb on + strand, within AZOBR_RS18645 at 954.827 kb on - strand, within AZOBR_RS18645 at 954.827 kb on - strand, within AZOBR_RS18645 at 954.827 kb on - strand, within AZOBR_RS18645 at 955.280 kb on - strand at 955.288 kb on + strand at 955.288 kb on + strand at 955.288 kb on + strand at 955.289 kb on - strand at 955.294 kb on + strand at 955.321 kb on + strand, within AZOBR_RS18650 at 955.321 kb on + strand, within AZOBR_RS18650 at 955.321 kb on + strand, within AZOBR_RS18650 at 955.322 kb on - strand, within AZOBR_RS18650 at 955.322 kb on - strand, within AZOBR_RS18650 at 955.322 kb on - strand, within AZOBR_RS18650 at 955.322 kb on - strand, within AZOBR_RS18650 at 955.322 kb on - strand, within AZOBR_RS18650 at 955.411 kb on + strand, within AZOBR_RS18650 at 955.411 kb on + strand, within AZOBR_RS18650 at 955.438 kb on + strand, within AZOBR_RS18650 at 955.668 kb on + strand at 955.668 kb on + strand at 955.668 kb on + strand at 955.669 kb on - strand at 955.669 kb on - strand at 955.669 kb on - strand at 955.669 kb on - strand at 955.669 kb on - strand at 955.669 kb on - strand at 955.670 kb on + strand at 955.670 kb on + strand at 955.671 kb on - strand at 955.671 kb on - strand at 955.671 kb on - strand at 955.671 kb on - strand at 955.671 kb on - strand at 955.671 kb on - strand at 955.767 kb on - strand at 955.767 kb on - strand at 956.129 kb on - strand, within AZOBR_RS18655 at 956.129 kb on - strand, within AZOBR_RS18655 at 956.129 kb on - strand, within AZOBR_RS18655
Per-strain Table
Position Strand Gene LocusTag Fraction 2-pentyl-furan 1.335528 mM remove 953,118 - AZOBR_RS18640 0.13 +0.6 953,420 + AZOBR_RS18640 0.46 +0.3 954,166 + +0.2 954,167 - +0.5 954,167 - -0.0 954,167 - -0.5 954,167 - -1.8 954,260 - AZOBR_RS18645 0.15 +0.7 954,274 + AZOBR_RS18645 0.16 -0.5 954,274 + AZOBR_RS18645 0.16 +0.4 954,275 - AZOBR_RS18645 0.16 -0.2 954,331 + AZOBR_RS18645 0.21 -0.8 954,331 + AZOBR_RS18645 0.21 -1.3 954,332 - AZOBR_RS18645 0.21 -1.7 954,332 - AZOBR_RS18645 0.21 +0.0 954,373 + AZOBR_RS18645 0.24 +1.5 954,374 - AZOBR_RS18645 0.25 -0.2 954,376 + AZOBR_RS18645 0.25 -0.6 954,394 + AZOBR_RS18645 0.26 -0.4 954,394 + AZOBR_RS18645 0.26 +0.2 954,394 + AZOBR_RS18645 0.26 -0.3 954,394 + AZOBR_RS18645 0.26 -0.8 954,394 + AZOBR_RS18645 0.26 -0.5 954,394 + AZOBR_RS18645 0.26 -0.7 954,395 - AZOBR_RS18645 0.26 -0.6 954,395 - AZOBR_RS18645 0.26 -0.2 954,395 - +1.3 954,395 - AZOBR_RS18645 0.26 -0.3 954,760 + AZOBR_RS18645 0.57 +0.7 954,760 + AZOBR_RS18645 0.57 -2.9 954,760 + AZOBR_RS18645 0.57 -0.3 954,761 - AZOBR_RS18645 0.57 -1.2 954,826 + AZOBR_RS18645 0.62 +0.6 954,826 + AZOBR_RS18645 0.62 -0.6 954,827 - AZOBR_RS18645 0.62 -0.5 954,827 - AZOBR_RS18645 0.62 -0.8 954,827 - AZOBR_RS18645 0.62 -0.9 955,280 - +0.1 955,288 + +0.6 955,288 + -0.2 955,288 + +0.2 955,289 - -0.3 955,294 + +0.1 955,321 + AZOBR_RS18650 0.15 -1.5 955,321 + AZOBR_RS18650 0.15 -0.6 955,321 + AZOBR_RS18650 0.15 -1.1 955,322 - AZOBR_RS18650 0.15 +0.6 955,322 - AZOBR_RS18650 0.15 -0.6 955,322 - AZOBR_RS18650 0.15 +0.3 955,322 - AZOBR_RS18650 0.15 -0.3 955,322 - AZOBR_RS18650 0.15 -1.5 955,411 + AZOBR_RS18650 0.40 -0.6 955,411 + AZOBR_RS18650 0.40 -0.3 955,438 + AZOBR_RS18650 0.47 -0.3 955,668 + -0.9 955,668 + +1.6 955,668 + +1.6 955,669 - +0.1 955,669 - -0.4 955,669 - -1.3 955,669 - -0.2 955,669 - -0.6 955,669 - +0.2 955,670 + -1.3 955,670 + +1.3 955,671 - +0.8 955,671 - +0.3 955,671 - -0.3 955,671 - +0.1 955,671 - +0.8 955,671 - -0.3 955,767 - -0.3 955,767 - -0.8 956,129 - AZOBR_RS18655 0.63 -0.3 956,129 - AZOBR_RS18655 0.63 +0.8 956,129 - AZOBR_RS18655 0.63 -1.9
Or see this region's nucleotide sequence