Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS16790

Experiment: 2-pentyl-furan 1.335528 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAZOBR_RS16785 and AZOBR_RS16790 are separated by 317 nucleotidesAZOBR_RS16790 and AZOBR_RS16795 are separated by 315 nucleotides AZOBR_RS16785: AZOBR_RS16785 - hypothetical protein, at 523,190 to 523,429 _RS16785 AZOBR_RS16790: AZOBR_RS16790 - hypothetical protein, at 523,747 to 525,291 _RS16790 AZOBR_RS16795: AZOBR_RS16795 - hypothetical protein, at 525,607 to 527,181 _RS16795 Position (kb) 523 524 525 526Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 523.095 kb on + strandat 523.488 kb on + strandat 523.488 kb on + strandat 523.522 kb on - strandat 523.522 kb on - strandat 523.528 kb on + strandat 523.585 kb on + strandat 523.585 kb on + strandat 523.586 kb on - strandat 523.651 kb on - strandat 523.853 kb on - strandat 523.853 kb on - strandat 524.114 kb on - strand, within AZOBR_RS16790at 524.116 kb on + strand, within AZOBR_RS16790at 524.116 kb on + strand, within AZOBR_RS16790at 524.116 kb on + strand, within AZOBR_RS16790at 524.116 kb on + strand, within AZOBR_RS16790at 524.117 kb on - strand, within AZOBR_RS16790at 524.117 kb on - strand, within AZOBR_RS16790at 524.117 kb on - strand, within AZOBR_RS16790at 524.360 kb on - strand, within AZOBR_RS16790at 524.360 kb on - strand, within AZOBR_RS16790at 524.614 kb on + strand, within AZOBR_RS16790at 524.614 kb on + strand, within AZOBR_RS16790at 524.615 kb on - strand, within AZOBR_RS16790at 524.662 kb on + strand, within AZOBR_RS16790at 524.662 kb on + strand, within AZOBR_RS16790at 524.662 kb on + strand, within AZOBR_RS16790at 524.662 kb on + strand, within AZOBR_RS16790at 524.663 kb on - strand, within AZOBR_RS16790at 524.737 kb on + strand, within AZOBR_RS16790at 524.826 kb on + strand, within AZOBR_RS16790at 524.827 kb on - strand, within AZOBR_RS16790at 525.074 kb on + strand, within AZOBR_RS16790at 525.075 kb on - strand, within AZOBR_RS16790at 525.075 kb on - strand, within AZOBR_RS16790at 525.075 kb on - strand, within AZOBR_RS16790at 525.093 kb on + strand, within AZOBR_RS16790at 525.216 kb on + strandat 525.248 kb on - strandat 525.248 kb on - strandat 525.308 kb on - strandat 525.412 kb on + strandat 525.412 kb on + strandat 525.413 kb on - strandat 525.458 kb on - strandat 525.472 kb on - strandat 525.664 kb on + strandat 525.664 kb on + strandat 525.664 kb on + strandat 525.664 kb on + strandat 525.664 kb on + strandat 525.665 kb on - strandat 525.665 kb on - strandat 525.665 kb on - strandat 525.665 kb on - strandat 525.665 kb on - strandat 525.665 kb on - strandat 525.736 kb on + strandat 525.736 kb on + strandat 525.736 kb on + strandat 525.737 kb on - strandat 525.737 kb on - strandat 525.737 kb on - strandat 525.737 kb on - strandat 525.737 kb on - strandat 525.895 kb on - strand, within AZOBR_RS16795at 525.998 kb on - strand, within AZOBR_RS16795at 525.998 kb on - strand, within AZOBR_RS16795at 526.245 kb on + strand, within AZOBR_RS16795at 526.246 kb on - strand, within AZOBR_RS16795at 526.246 kb on - strand, within AZOBR_RS16795

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 2-pentyl-furan 1.335528 mM
remove
523,095 + -0.9
523,488 + -0.5
523,488 + +1.8
523,522 - +0.2
523,522 - -0.2
523,528 + -0.5
523,585 + +1.3
523,585 + -1.4
523,586 - +0.0
523,651 - -0.7
523,853 - +0.5
523,853 - -0.1
524,114 - AZOBR_RS16790 0.24 -0.5
524,116 + AZOBR_RS16790 0.24 -3.9
524,116 + AZOBR_RS16790 0.24 -0.5
524,116 + AZOBR_RS16790 0.24 +0.6
524,116 + AZOBR_RS16790 0.24 -1.5
524,117 - AZOBR_RS16790 0.24 +0.7
524,117 - AZOBR_RS16790 0.24 +1.7
524,117 - AZOBR_RS16790 0.24 +1.9
524,360 - AZOBR_RS16790 0.40 -1.1
524,360 - AZOBR_RS16790 0.40 -1.6
524,614 + AZOBR_RS16790 0.56 -0.5
524,614 + AZOBR_RS16790 0.56 -1.6
524,615 - AZOBR_RS16790 0.56 -2.8
524,662 + AZOBR_RS16790 0.59 -0.3
524,662 + AZOBR_RS16790 0.59 -0.1
524,662 + AZOBR_RS16790 0.59 -0.6
524,662 + AZOBR_RS16790 0.59 -1.2
524,663 - AZOBR_RS16790 0.59 -2.2
524,737 + AZOBR_RS16790 0.64 +0.0
524,826 + AZOBR_RS16790 0.70 -0.1
524,827 - AZOBR_RS16790 0.70 +2.3
525,074 + AZOBR_RS16790 0.86 +0.1
525,075 - AZOBR_RS16790 0.86 +1.3
525,075 - AZOBR_RS16790 0.86 -0.1
525,075 - AZOBR_RS16790 0.86 -0.5
525,093 + AZOBR_RS16790 0.87 -2.1
525,216 + +0.7
525,248 - +0.7
525,248 - -0.9
525,308 - -1.2
525,412 + +0.6
525,412 + -1.3
525,413 - -0.1
525,458 - +0.9
525,472 - -0.5
525,664 + -1.0
525,664 + -2.7
525,664 + -0.8
525,664 + -2.6
525,664 + -0.9
525,665 - +1.3
525,665 - -1.7
525,665 - +1.9
525,665 - +0.3
525,665 - +0.7
525,665 - +1.3
525,736 + -1.5
525,736 + -1.3
525,736 + -2.1
525,737 - -0.7
525,737 - -0.1
525,737 - -1.4
525,737 - -1.1
525,737 - -1.4
525,895 - AZOBR_RS16795 0.18 +1.3
525,998 - AZOBR_RS16795 0.25 -0.3
525,998 - AZOBR_RS16795 0.25 -0.1
526,245 + AZOBR_RS16795 0.41 -1.2
526,246 - AZOBR_RS16795 0.41 -0.5
526,246 - AZOBR_RS16795 0.41 -0.7

Or see this region's nucleotide sequence