Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS16785

Experiment: 2-pentyl-furan 1.335528 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS16785 and AZOBR_RS16790 are separated by 317 nucleotides AZOBR_RS16785: AZOBR_RS16785 - hypothetical protein, at 523,190 to 523,429 _RS16785 AZOBR_RS16790: AZOBR_RS16790 - hypothetical protein, at 523,747 to 525,291 _RS16790 Position (kb) 523 524Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 522.672 kb on + strandat 523.095 kb on + strandat 523.488 kb on + strandat 523.488 kb on + strandat 523.522 kb on - strandat 523.522 kb on - strandat 523.528 kb on + strandat 523.585 kb on + strandat 523.585 kb on + strandat 523.586 kb on - strandat 523.651 kb on - strandat 523.853 kb on - strandat 523.853 kb on - strandat 524.114 kb on - strand, within AZOBR_RS16790at 524.116 kb on + strand, within AZOBR_RS16790at 524.116 kb on + strand, within AZOBR_RS16790at 524.116 kb on + strand, within AZOBR_RS16790at 524.116 kb on + strand, within AZOBR_RS16790at 524.117 kb on - strand, within AZOBR_RS16790at 524.117 kb on - strand, within AZOBR_RS16790at 524.117 kb on - strand, within AZOBR_RS16790at 524.360 kb on - strand, within AZOBR_RS16790at 524.360 kb on - strand, within AZOBR_RS16790

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-pentyl-furan 1.335528 mM
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522,672 + +0.6
523,095 + -0.9
523,488 + -0.5
523,488 + +1.8
523,522 - +0.2
523,522 - -0.2
523,528 + -0.5
523,585 + +1.3
523,585 + -1.4
523,586 - +0.0
523,651 - -0.7
523,853 - +0.5
523,853 - -0.1
524,114 - AZOBR_RS16790 0.24 -0.5
524,116 + AZOBR_RS16790 0.24 -3.9
524,116 + AZOBR_RS16790 0.24 -0.5
524,116 + AZOBR_RS16790 0.24 +0.6
524,116 + AZOBR_RS16790 0.24 -1.5
524,117 - AZOBR_RS16790 0.24 +0.7
524,117 - AZOBR_RS16790 0.24 +1.7
524,117 - AZOBR_RS16790 0.24 +1.9
524,360 - AZOBR_RS16790 0.40 -1.1
524,360 - AZOBR_RS16790 0.40 -1.6

Or see this region's nucleotide sequence