Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS15620

Experiment: 2-pentyl-furan 1.335528 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAZOBR_RS15615 and AZOBR_RS15620 are separated by 129 nucleotidesAZOBR_RS15620 and AZOBR_RS15625 are separated by 240 nucleotides AZOBR_RS15615: AZOBR_RS15615 - ABC transporter substrate-binding protein, at 259,876 to 261,084 _RS15615 AZOBR_RS15620: AZOBR_RS15620 - GntR family transcriptional regulator, at 261,214 to 262,008 _RS15620 AZOBR_RS15625: AZOBR_RS15625 - deoxycytidine triphosphate deaminase, at 262,249 to 262,833 _RS15625 Position (kb) 261 262 263Strain fitness (log2 ratio) -2 -1 0 1 2at 260.297 kb on + strand, within AZOBR_RS15615at 260.364 kb on - strand, within AZOBR_RS15615at 260.364 kb on - strand, within AZOBR_RS15615at 260.424 kb on + strand, within AZOBR_RS15615at 260.425 kb on - strand, within AZOBR_RS15615at 260.697 kb on - strand, within AZOBR_RS15615at 260.697 kb on - strand, within AZOBR_RS15615at 261.542 kb on + strand, within AZOBR_RS15620at 261.581 kb on + strand, within AZOBR_RS15620at 261.582 kb on - strand, within AZOBR_RS15620at 262.042 kb on + strandat 262.042 kb on + strandat 262.942 kb on - strandat 262.942 kb on - strandat 262.942 kb on - strandat 262.942 kb on - strandat 262.942 kb on - strandat 262.942 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 2-pentyl-furan 1.335528 mM
remove
260,297 + AZOBR_RS15615 0.35 -0.9
260,364 - AZOBR_RS15615 0.40 +0.7
260,364 - AZOBR_RS15615 0.40 -1.8
260,424 + AZOBR_RS15615 0.45 -1.0
260,425 - AZOBR_RS15615 0.45 +0.7
260,697 - AZOBR_RS15615 0.68 -0.7
260,697 - AZOBR_RS15615 0.68 +1.3
261,542 + AZOBR_RS15620 0.41 +2.3
261,581 + AZOBR_RS15620 0.46 +0.7
261,582 - AZOBR_RS15620 0.46 -0.9
262,042 + +0.4
262,042 + -0.3
262,942 - -0.1
262,942 - -0.9
262,942 - +0.8
262,942 - -0.5
262,942 - -0.1
262,942 - -0.7

Or see this region's nucleotide sequence