Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS11335

Experiment: 2-pentyl-furan 1.335528 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAZOBR_RS11330 and AZOBR_RS11335 are separated by 131 nucleotidesAZOBR_RS11335 and AZOBR_RS11340 are separated by 10 nucleotides AZOBR_RS11330: AZOBR_RS11330 - two-component sensor histidine kinase, at 2,380,151 to 2,382,010 _RS11330 AZOBR_RS11335: AZOBR_RS11335 - alpha/beta hydrolase, at 2,382,142 to 2,382,939 _RS11335 AZOBR_RS11340: AZOBR_RS11340 - O-acetylhomoserine aminocarboxypropyltransferase, at 2,382,950 to 2,384,260 _RS11340 Position (kb) 2382 2383Strain fitness (log2 ratio) -2 -1 0 1at 2381.301 kb on + strand, within AZOBR_RS11330at 2381.759 kb on - strand, within AZOBR_RS11330at 2381.759 kb on - strand, within AZOBR_RS11330at 2382.144 kb on - strandat 2382.207 kb on + strandat 2382.289 kb on - strand, within AZOBR_RS11335at 2382.359 kb on + strand, within AZOBR_RS11335at 2382.359 kb on + strand, within AZOBR_RS11335at 2382.360 kb on - strand, within AZOBR_RS11335at 2382.360 kb on - strand, within AZOBR_RS11335at 2383.317 kb on + strand, within AZOBR_RS11340at 2383.495 kb on - strand, within AZOBR_RS11340at 2383.686 kb on + strand, within AZOBR_RS11340at 2383.687 kb on - strand, within AZOBR_RS11340

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 2-pentyl-furan 1.335528 mM
remove
2,381,301 + AZOBR_RS11330 0.62 +0.8
2,381,759 - AZOBR_RS11330 0.86 +0.1
2,381,759 - AZOBR_RS11330 0.86 -2.3
2,382,144 - -0.5
2,382,207 + +1.0
2,382,289 - AZOBR_RS11335 0.18 +0.0
2,382,359 + AZOBR_RS11335 0.27 -1.1
2,382,359 + AZOBR_RS11335 0.27 +0.5
2,382,360 - AZOBR_RS11335 0.27 -1.5
2,382,360 - AZOBR_RS11335 0.27 -0.2
2,383,317 + AZOBR_RS11340 0.28 -1.1
2,383,495 - AZOBR_RS11340 0.42 -0.4
2,383,686 + AZOBR_RS11340 0.56 -1.1
2,383,687 - AZOBR_RS11340 0.56 -0.0

Or see this region's nucleotide sequence