Experiment: 2-pentyl-furan 1.335528 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS11110 and AZOBR_RS11115 are separated by 15 nucleotides AZOBR_RS11115 and AZOBR_RS11120 are separated by 50 nucleotides AZOBR_RS11120 and AZOBR_RS11125 are separated by 45 nucleotides AZOBR_RS11125 and AZOBR_RS11135 are separated by 499 nucleotides
AZOBR_RS11110: AZOBR_RS11110 - flagellar biosynthesis protein, at 2,340,404 to 2,341,480
_RS11110
AZOBR_RS11115: AZOBR_RS11115 - flagellar biosynthesis protein FliR, at 2,341,496 to 2,342,266
_RS11115
AZOBR_RS11120: AZOBR_RS11120 - flagellar biosynthesis protein, at 2,342,317 to 2,342,583
_RS11120
AZOBR_RS11125: AZOBR_RS11125 - flagellar hook-basal body protein FliE, at 2,342,629 to 2,342,928
_RS11125
AZOBR_RS11135: AZOBR_RS11135 - flagellar basal-body rod protein FlgB, at 2,343,428 to 2,343,832
_RS11135
Position (kb)
2342
2343 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 2341.803 kb on + strand, within AZOBR_RS11115 at 2341.804 kb on - strand, within AZOBR_RS11115 at 2341.804 kb on - strand, within AZOBR_RS11115 at 2341.804 kb on - strand, within AZOBR_RS11115 at 2341.804 kb on - strand, within AZOBR_RS11115 at 2342.681 kb on - strand, within AZOBR_RS11125 at 2343.040 kb on + strand at 2343.040 kb on + strand at 2343.041 kb on - strand at 2343.106 kb on + strand at 2343.106 kb on + strand at 2343.107 kb on - strand at 2343.142 kb on + strand at 2343.368 kb on + strand at 2343.368 kb on + strand at 2343.368 kb on + strand at 2343.368 kb on + strand at 2343.369 kb on - strand at 2343.477 kb on + strand, within AZOBR_RS11135 at 2343.477 kb on + strand, within AZOBR_RS11135 at 2343.574 kb on - strand, within AZOBR_RS11135
Per-strain Table
Position Strand Gene LocusTag Fraction 2-pentyl-furan 1.335528 mM remove 2,341,803 + AZOBR_RS11115 0.40 -1.3 2,341,804 - AZOBR_RS11115 0.40 -1.1 2,341,804 - AZOBR_RS11115 0.40 -1.8 2,341,804 - AZOBR_RS11115 0.40 -0.2 2,341,804 - AZOBR_RS11115 0.40 -0.8 2,342,681 - AZOBR_RS11125 0.17 -2.6 2,343,040 + +1.6 2,343,040 + -2.2 2,343,041 - -1.0 2,343,106 + +0.8 2,343,106 + -0.8 2,343,107 - -3.9 2,343,142 + -3.1 2,343,368 + -1.1 2,343,368 + -4.4 2,343,368 + -0.8 2,343,368 + -1.8 2,343,369 - -1.6 2,343,477 + AZOBR_RS11135 0.12 -4.5 2,343,477 + AZOBR_RS11135 0.12 -2.3 2,343,574 - AZOBR_RS11135 0.36 -0.8
Or see this region's nucleotide sequence