Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS11110

Experiment: 2-pentyl-furan 1.335528 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAZOBR_RS11105 and AZOBR_RS11110 are separated by 50 nucleotidesAZOBR_RS11110 and AZOBR_RS11115 are separated by 15 nucleotidesAZOBR_RS11115 and AZOBR_RS11120 are separated by 50 nucleotides AZOBR_RS11105: AZOBR_RS11105 - histidine kinase, at 2,337,828 to 2,340,353 _RS11105 AZOBR_RS11110: AZOBR_RS11110 - flagellar biosynthesis protein, at 2,340,404 to 2,341,480 _RS11110 AZOBR_RS11115: AZOBR_RS11115 - flagellar biosynthesis protein FliR, at 2,341,496 to 2,342,266 _RS11115 AZOBR_RS11120: AZOBR_RS11120 - flagellar biosynthesis protein, at 2,342,317 to 2,342,583 _RS11120 Position (kb) 2340 2341 2342Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2339.862 kb on + strand, within AZOBR_RS11105at 2339.862 kb on + strand, within AZOBR_RS11105at 2339.863 kb on - strand, within AZOBR_RS11105at 2340.441 kb on + strandat 2340.441 kb on + strandat 2340.441 kb on + strandat 2340.441 kb on + strandat 2340.441 kb on + strandat 2340.441 kb on + strandat 2340.441 kb on + strandat 2340.442 kb on - strandat 2340.446 kb on - strandat 2340.469 kb on - strandat 2340.511 kb on - strandat 2340.643 kb on - strand, within AZOBR_RS11110at 2340.643 kb on - strand, within AZOBR_RS11110at 2340.996 kb on + strand, within AZOBR_RS11110at 2341.803 kb on + strand, within AZOBR_RS11115at 2341.804 kb on - strand, within AZOBR_RS11115at 2341.804 kb on - strand, within AZOBR_RS11115at 2341.804 kb on - strand, within AZOBR_RS11115at 2341.804 kb on - strand, within AZOBR_RS11115

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 2-pentyl-furan 1.335528 mM
remove
2,339,862 + AZOBR_RS11105 0.81 +2.3
2,339,862 + AZOBR_RS11105 0.81 +2.3
2,339,863 - AZOBR_RS11105 0.81 +0.5
2,340,441 + -2.1
2,340,441 + +1.3
2,340,441 + -1.7
2,340,441 + +1.3
2,340,441 + -1.0
2,340,441 + -2.8
2,340,441 + -1.3
2,340,442 - -2.2
2,340,446 - +0.3
2,340,469 - -2.8
2,340,511 - -2.5
2,340,643 - AZOBR_RS11110 0.22 -2.1
2,340,643 - AZOBR_RS11110 0.22 -2.9
2,340,996 + AZOBR_RS11110 0.55 -2.2
2,341,803 + AZOBR_RS11115 0.40 -1.3
2,341,804 - AZOBR_RS11115 0.40 -1.1
2,341,804 - AZOBR_RS11115 0.40 -1.8
2,341,804 - AZOBR_RS11115 0.40 -0.2
2,341,804 - AZOBR_RS11115 0.40 -0.8

Or see this region's nucleotide sequence