Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS09410

Experiment: 2-pentyl-furan 1.335528 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS09405 and AZOBR_RS09410 are separated by 139 nucleotidesAZOBR_RS09410 and AZOBR_RS09415 are separated by 32 nucleotides AZOBR_RS09405: AZOBR_RS09405 - acyl-CoA synthetase, at 1,966,029 to 1,967,663 _RS09405 AZOBR_RS09410: AZOBR_RS09410 - 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase, at 1,967,803 to 1,968,564 _RS09410 AZOBR_RS09415: AZOBR_RS09415 - acyl-CoA dehydrogenase, at 1,968,597 to 1,969,793 _RS09415 Position (kb) 1967 1968 1969Strain fitness (log2 ratio) -2 -1 0 1 2at 1967.014 kb on - strandat 1967.032 kb on - strand, within AZOBR_RS09405at 1967.032 kb on - strand, within AZOBR_RS09405at 1967.239 kb on - strand, within AZOBR_RS09405at 1967.325 kb on + strand, within AZOBR_RS09405at 1967.409 kb on + strand, within AZOBR_RS09405at 1967.753 kb on - strandat 1968.271 kb on + strand, within AZOBR_RS09410at 1968.272 kb on - strand, within AZOBR_RS09410at 1968.367 kb on + strand, within AZOBR_RS09410at 1968.509 kb on - strandat 1968.548 kb on + strandat 1968.549 kb on - strandat 1968.562 kb on + strandat 1968.562 kb on + strandat 1968.697 kb on - strandat 1969.085 kb on + strand, within AZOBR_RS09415at 1969.416 kb on + strand, within AZOBR_RS09415at 1969.417 kb on - strand, within AZOBR_RS09415

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-pentyl-furan 1.335528 mM
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1,967,014 - +2.0
1,967,032 - AZOBR_RS09405 0.61 -0.3
1,967,032 - AZOBR_RS09405 0.61 +1.6
1,967,239 - AZOBR_RS09405 0.74 -0.9
1,967,325 + AZOBR_RS09405 0.79 -0.9
1,967,409 + AZOBR_RS09405 0.84 +0.1
1,967,753 - +0.2
1,968,271 + AZOBR_RS09410 0.61 -0.1
1,968,272 - AZOBR_RS09410 0.62 -1.4
1,968,367 + AZOBR_RS09410 0.74 +0.6
1,968,509 - +0.7
1,968,548 + -1.9
1,968,549 - +1.0
1,968,562 + -0.3
1,968,562 + +0.6
1,968,697 - +0.3
1,969,085 + AZOBR_RS09415 0.41 -0.2
1,969,416 + AZOBR_RS09415 0.68 +0.3
1,969,417 - AZOBR_RS09415 0.69 +0.4

Or see this region's nucleotide sequence