Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS09140

Experiment: 2-pentyl-furan 1.335528 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS09130 and AZOBR_RS09135 overlap by 32 nucleotidesAZOBR_RS09135 and AZOBR_RS09140 are separated by 260 nucleotidesAZOBR_RS09140 and AZOBR_RS09145 are separated by 56 nucleotidesAZOBR_RS09145 and AZOBR_RS09150 are separated by 13 nucleotides AZOBR_RS09130: AZOBR_RS09130 - conserved membrane protein of unknown function, at 1,908,008 to 1,908,946 _RS09130 AZOBR_RS09135: AZOBR_RS09135 - GCN5 family acetyltransferase, at 1,908,915 to 1,909,355 _RS09135 AZOBR_RS09140: AZOBR_RS09140 - UDP-N-acetylglucosamine 1-carboxyvinyltransferase, at 1,909,616 to 1,910,920 _RS09140 AZOBR_RS09145: AZOBR_RS09145 - hypothetical protein, at 1,910,977 to 1,911,441 _RS09145 AZOBR_RS09150: AZOBR_RS09150 - peroxiredoxin, at 1,911,455 to 1,911,874 _RS09150 Position (kb) 1909 1910 1911Strain fitness (log2 ratio) -1 0 1at 1908.645 kb on - strand, within AZOBR_RS09130at 1908.720 kb on - strandat 1908.729 kb on - strand, within AZOBR_RS09130at 1909.015 kb on + strand, within AZOBR_RS09135at 1909.040 kb on - strand, within AZOBR_RS09135at 1909.045 kb on + strand, within AZOBR_RS09135at 1909.046 kb on - strand, within AZOBR_RS09135at 1909.046 kb on - strand, within AZOBR_RS09135at 1909.150 kb on + strand, within AZOBR_RS09135at 1909.151 kb on - strand, within AZOBR_RS09135at 1909.151 kb on - strand, within AZOBR_RS09135at 1909.159 kb on + strand, within AZOBR_RS09135at 1909.159 kb on + strand, within AZOBR_RS09135at 1909.396 kb on - strandat 1909.472 kb on + strandat 1911.878 kb on + strandat 1911.878 kb on + strandat 1911.893 kb on + strandat 1911.894 kb on - strandat 1911.894 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-pentyl-furan 1.335528 mM
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1,908,645 - AZOBR_RS09130 0.68 +0.2
1,908,720 - +0.8
1,908,729 - AZOBR_RS09130 0.77 -0.6
1,909,015 + AZOBR_RS09135 0.23 +1.2
1,909,040 - AZOBR_RS09135 0.28 +0.3
1,909,045 + AZOBR_RS09135 0.29 +0.5
1,909,046 - AZOBR_RS09135 0.30 +0.6
1,909,046 - AZOBR_RS09135 0.30 -0.0
1,909,150 + AZOBR_RS09135 0.53 +0.4
1,909,151 - AZOBR_RS09135 0.54 +0.3
1,909,151 - AZOBR_RS09135 0.54 +0.8
1,909,159 + AZOBR_RS09135 0.55 +0.0
1,909,159 + AZOBR_RS09135 0.55 +1.5
1,909,396 - -0.1
1,909,472 + -0.9
1,911,878 + +0.2
1,911,878 + +0.3
1,911,893 + -1.0
1,911,894 - +0.5
1,911,894 - -0.9

Or see this region's nucleotide sequence