Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS08765

Experiment: 2-pentyl-furan 1.335528 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS08760 and AZOBR_RS08765 are separated by 160 nucleotidesAZOBR_RS08765 and GFF1676 are separated by 72 nucleotidesGFF1676 and GFF1677 are separated by 100 nucleotides AZOBR_RS08760: AZOBR_RS08760 - putative methyl-accepting chemotaxis protein, at 1,832,226 to 1,834,184 _RS08760 AZOBR_RS08765: AZOBR_RS08765 - membrane protein, at 1,834,345 to 1,835,178 _RS08765 GFF1676 - lipoprotein, at 1,835,251 to 1,835,834 GFF1676 GFF1677 - lipoprotein, at 1,835,935 to 1,836,300 GFF1677 Position (kb) 1834 1835 1836Strain fitness (log2 ratio) -1 0 1at 1833.520 kb on + strand, within AZOBR_RS08760at 1833.521 kb on - strand, within AZOBR_RS08760at 1833.521 kb on - strand, within AZOBR_RS08760at 1833.521 kb on - strand, within AZOBR_RS08760at 1833.640 kb on + strand, within AZOBR_RS08760at 1833.640 kb on + strand, within AZOBR_RS08760at 1833.640 kb on + strand, within AZOBR_RS08760at 1833.641 kb on - strand, within AZOBR_RS08760at 1834.037 kb on - strandat 1834.037 kb on - strandat 1834.184 kb on + strandat 1834.185 kb on - strandat 1834.217 kb on + strandat 1834.243 kb on - strandat 1834.306 kb on - strandat 1834.310 kb on - strandat 1834.831 kb on + strand, within AZOBR_RS08765at 1834.852 kb on - strand, within AZOBR_RS08765at 1835.000 kb on - strand, within AZOBR_RS08765at 1835.000 kb on - strand, within AZOBR_RS08765at 1835.000 kb on - strand, within AZOBR_RS08765at 1835.102 kb on - strandat 1835.207 kb on + strandat 1835.207 kb on + strandat 1835.208 kb on - strandat 1835.236 kb on + strandat 1835.237 kb on - strandat 1835.266 kb on - strandat 1835.266 kb on - strandat 1835.266 kb on - strandat 1835.387 kb on - strandat 1835.387 kb on - strand, within GFF1676at 1835.410 kb on + strand, within GFF1676at 1835.426 kb on - strand, within GFF1676at 1835.432 kb on - strand, within GFF1676at 1835.458 kb on + strand, within GFF1676at 1835.620 kb on + strand, within GFF1676at 1836.079 kb on + strand, within GFF1677at 1836.079 kb on + strand, within GFF1677at 1836.079 kb on + strand, within GFF1677at 1836.079 kb on + strand, within GFF1677at 1836.079 kb on + strand, within GFF1677at 1836.079 kb on + strand, within GFF1677at 1836.079 kb on + strand, within GFF1677at 1836.080 kb on - strand, within GFF1677at 1836.080 kb on - strand, within GFF1677at 1836.080 kb on - strand, within GFF1677

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-pentyl-furan 1.335528 mM
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1,833,520 + AZOBR_RS08760 0.66 -0.5
1,833,521 - AZOBR_RS08760 0.66 -0.7
1,833,521 - AZOBR_RS08760 0.66 -1.0
1,833,521 - AZOBR_RS08760 0.66 -1.2
1,833,640 + AZOBR_RS08760 0.72 -0.2
1,833,640 + AZOBR_RS08760 0.72 -1.7
1,833,640 + AZOBR_RS08760 0.72 +0.0
1,833,641 - AZOBR_RS08760 0.72 +0.3
1,834,037 - +0.4
1,834,037 - +0.1
1,834,184 + +0.3
1,834,185 - -0.0
1,834,217 + +0.2
1,834,243 - +0.4
1,834,306 - +0.7
1,834,310 - +0.3
1,834,831 + AZOBR_RS08765 0.58 +0.7
1,834,852 - AZOBR_RS08765 0.61 -1.3
1,835,000 - AZOBR_RS08765 0.79 +0.3
1,835,000 - AZOBR_RS08765 0.79 -0.8
1,835,000 - AZOBR_RS08765 0.79 -0.6
1,835,102 - +1.0
1,835,207 + +0.1
1,835,207 + -1.3
1,835,208 - +0.6
1,835,236 + -0.6
1,835,237 - -0.9
1,835,266 - +0.2
1,835,266 - +0.7
1,835,266 - +0.4
1,835,387 - +0.7
1,835,387 - GFF1676 0.23 +0.1
1,835,410 + GFF1676 0.27 +0.6
1,835,426 - GFF1676 0.30 -0.2
1,835,432 - GFF1676 0.31 -0.4
1,835,458 + GFF1676 0.35 -0.5
1,835,620 + GFF1676 0.63 -1.5
1,836,079 + GFF1677 0.39 +1.1
1,836,079 + GFF1677 0.39 +0.1
1,836,079 + GFF1677 0.39 +0.1
1,836,079 + GFF1677 0.39 -0.2
1,836,079 + GFF1677 0.39 +0.2
1,836,079 + GFF1677 0.39 -1.1
1,836,079 + GFF1677 0.39 -0.3
1,836,080 - GFF1677 0.40 +0.8
1,836,080 - GFF1677 0.40 +0.6
1,836,080 - GFF1677 0.40 -0.4

Or see this region's nucleotide sequence