Experiment: 2-pentyl-furan 1.335528 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS08760 and AZOBR_RS08765 are separated by 160 nucleotides AZOBR_RS08765 and GFF1676 are separated by 72 nucleotides GFF1676 and GFF1677 are separated by 100 nucleotides
AZOBR_RS08760: AZOBR_RS08760 - putative methyl-accepting chemotaxis protein, at 1,832,226 to 1,834,184
_RS08760
AZOBR_RS08765: AZOBR_RS08765 - membrane protein, at 1,834,345 to 1,835,178
_RS08765
GFF1676 - lipoprotein, at 1,835,251 to 1,835,834
GFF1676
GFF1677 - lipoprotein, at 1,835,935 to 1,836,300
GFF1677
Position (kb)
1834
1835
1836 Strain fitness (log2 ratio)
-1
0
1 at 1833.520 kb on + strand, within AZOBR_RS08760 at 1833.521 kb on - strand, within AZOBR_RS08760 at 1833.521 kb on - strand, within AZOBR_RS08760 at 1833.521 kb on - strand, within AZOBR_RS08760 at 1833.640 kb on + strand, within AZOBR_RS08760 at 1833.640 kb on + strand, within AZOBR_RS08760 at 1833.640 kb on + strand, within AZOBR_RS08760 at 1833.641 kb on - strand, within AZOBR_RS08760 at 1834.037 kb on - strand at 1834.037 kb on - strand at 1834.184 kb on + strand at 1834.185 kb on - strand at 1834.217 kb on + strand at 1834.243 kb on - strand at 1834.306 kb on - strand at 1834.310 kb on - strand at 1834.831 kb on + strand, within AZOBR_RS08765 at 1834.852 kb on - strand, within AZOBR_RS08765 at 1835.000 kb on - strand, within AZOBR_RS08765 at 1835.000 kb on - strand, within AZOBR_RS08765 at 1835.000 kb on - strand, within AZOBR_RS08765 at 1835.102 kb on - strand at 1835.207 kb on + strand at 1835.207 kb on + strand at 1835.208 kb on - strand at 1835.236 kb on + strand at 1835.237 kb on - strand at 1835.266 kb on - strand at 1835.266 kb on - strand at 1835.266 kb on - strand at 1835.387 kb on - strand at 1835.387 kb on - strand, within GFF1676 at 1835.410 kb on + strand, within GFF1676 at 1835.426 kb on - strand, within GFF1676 at 1835.432 kb on - strand, within GFF1676 at 1835.458 kb on + strand, within GFF1676 at 1835.620 kb on + strand, within GFF1676 at 1836.079 kb on + strand, within GFF1677 at 1836.079 kb on + strand, within GFF1677 at 1836.079 kb on + strand, within GFF1677 at 1836.079 kb on + strand, within GFF1677 at 1836.079 kb on + strand, within GFF1677 at 1836.079 kb on + strand, within GFF1677 at 1836.079 kb on + strand, within GFF1677 at 1836.080 kb on - strand, within GFF1677 at 1836.080 kb on - strand, within GFF1677 at 1836.080 kb on - strand, within GFF1677
Per-strain Table
Position Strand Gene LocusTag Fraction 2-pentyl-furan 1.335528 mM remove 1,833,520 + AZOBR_RS08760 0.66 -0.5 1,833,521 - AZOBR_RS08760 0.66 -0.7 1,833,521 - AZOBR_RS08760 0.66 -1.0 1,833,521 - AZOBR_RS08760 0.66 -1.2 1,833,640 + AZOBR_RS08760 0.72 -0.2 1,833,640 + AZOBR_RS08760 0.72 -1.7 1,833,640 + AZOBR_RS08760 0.72 +0.0 1,833,641 - AZOBR_RS08760 0.72 +0.3 1,834,037 - +0.4 1,834,037 - +0.1 1,834,184 + +0.3 1,834,185 - -0.0 1,834,217 + +0.2 1,834,243 - +0.4 1,834,306 - +0.7 1,834,310 - +0.3 1,834,831 + AZOBR_RS08765 0.58 +0.7 1,834,852 - AZOBR_RS08765 0.61 -1.3 1,835,000 - AZOBR_RS08765 0.79 +0.3 1,835,000 - AZOBR_RS08765 0.79 -0.8 1,835,000 - AZOBR_RS08765 0.79 -0.6 1,835,102 - +1.0 1,835,207 + +0.1 1,835,207 + -1.3 1,835,208 - +0.6 1,835,236 + -0.6 1,835,237 - -0.9 1,835,266 - +0.2 1,835,266 - +0.7 1,835,266 - +0.4 1,835,387 - +0.7 1,835,387 - GFF1676 0.23 +0.1 1,835,410 + GFF1676 0.27 +0.6 1,835,426 - GFF1676 0.30 -0.2 1,835,432 - GFF1676 0.31 -0.4 1,835,458 + GFF1676 0.35 -0.5 1,835,620 + GFF1676 0.63 -1.5 1,836,079 + GFF1677 0.39 +1.1 1,836,079 + GFF1677 0.39 +0.1 1,836,079 + GFF1677 0.39 +0.1 1,836,079 + GFF1677 0.39 -0.2 1,836,079 + GFF1677 0.39 +0.2 1,836,079 + GFF1677 0.39 -1.1 1,836,079 + GFF1677 0.39 -0.3 1,836,080 - GFF1677 0.40 +0.8 1,836,080 - GFF1677 0.40 +0.6 1,836,080 - GFF1677 0.40 -0.4
Or see this region's nucleotide sequence