Experiment: 2-pentyl-furan 1.335528 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS04155 and AZOBR_RS04160 are separated by 19 nucleotides AZOBR_RS04160 and AZOBR_RS04165 are separated by 20 nucleotides AZOBR_RS04165 and AZOBR_RS04170 are separated by 22 nucleotides
AZOBR_RS04155: AZOBR_RS04155 - radical SAM protein, at 872,145 to 872,840
_RS04155
AZOBR_RS04160: AZOBR_RS04160 - 6-pyruvoyl tetrahydropterin synthase, at 872,860 to 873,405
_RS04160
AZOBR_RS04165: AZOBR_RS04165 - ABC transporter permease, at 873,426 to 874,340
_RS04165
AZOBR_RS04170: AZOBR_RS04170 - ABC transporter substrate-binding protein, at 874,363 to 875,529
_RS04170
Position (kb) 873
874
875 Strain fitness (log2 ratio) -2
-1
0
1
2 at 872.601 kb on + strand, within AZOBR_RS04155 at 872.601 kb on + strand, within AZOBR_RS04155 at 872.601 kb on + strand, within AZOBR_RS04155 at 872.601 kb on + strand, within AZOBR_RS04155 at 872.601 kb on + strand, within AZOBR_RS04155 at 872.602 kb on - strand, within AZOBR_RS04155 at 872.862 kb on - strand at 873.416 kb on + strand at 873.417 kb on - strand at 873.417 kb on - strand at 873.484 kb on + strand at 873.484 kb on + strand at 873.484 kb on + strand at 873.485 kb on - strand at 874.076 kb on - strand, within AZOBR_RS04165 at 874.207 kb on + strand, within AZOBR_RS04165 at 874.207 kb on + strand, within AZOBR_RS04165 at 874.207 kb on + strand, within AZOBR_RS04165 at 874.208 kb on - strand, within AZOBR_RS04165 at 874.208 kb on - strand, within AZOBR_RS04165 at 874.208 kb on - strand, within AZOBR_RS04165 at 874.208 kb on - strand, within AZOBR_RS04165 at 874.208 kb on - strand, within AZOBR_RS04165 at 874.388 kb on + strand at 874.388 kb on + strand at 874.472 kb on + strand at 874.472 kb on + strand at 874.472 kb on + strand at 874.472 kb on + strand at 874.472 kb on + strand at 874.472 kb on + strand at 874.472 kb on + strand at 874.473 kb on - strand at 874.473 kb on - strand at 874.473 kb on - strand at 874.628 kb on + strand, within AZOBR_RS04170 at 874.629 kb on - strand, within AZOBR_RS04170 at 874.643 kb on + strand, within AZOBR_RS04170 at 874.643 kb on + strand, within AZOBR_RS04170 at 874.643 kb on + strand, within AZOBR_RS04170 at 874.643 kb on + strand, within AZOBR_RS04170 at 874.643 kb on + strand, within AZOBR_RS04170 at 874.643 kb on + strand, within AZOBR_RS04170 at 874.644 kb on - strand, within AZOBR_RS04170 at 874.644 kb on - strand, within AZOBR_RS04170 at 874.664 kb on + strand, within AZOBR_RS04170 at 874.665 kb on - strand, within AZOBR_RS04170 at 874.665 kb on - strand, within AZOBR_RS04170 at 874.842 kb on - strand, within AZOBR_RS04170 at 874.842 kb on - strand, within AZOBR_RS04170 at 874.878 kb on - strand, within AZOBR_RS04170 at 874.887 kb on - strand, within AZOBR_RS04170 at 874.887 kb on - strand, within AZOBR_RS04170 at 874.934 kb on + strand, within AZOBR_RS04170 at 874.934 kb on + strand, within AZOBR_RS04170 at 874.959 kb on - strand, within AZOBR_RS04170 at 874.985 kb on + strand, within AZOBR_RS04170 at 874.985 kb on + strand, within AZOBR_RS04170 at 874.986 kb on - strand, within AZOBR_RS04170 at 874.986 kb on - strand, within AZOBR_RS04170 at 874.986 kb on - strand, within AZOBR_RS04170 at 874.988 kb on + strand, within AZOBR_RS04170 at 875.046 kb on - strand, within AZOBR_RS04170 at 875.129 kb on + strand, within AZOBR_RS04170 at 875.130 kb on - strand, within AZOBR_RS04170 at 875.130 kb on - strand, within AZOBR_RS04170
Per-strain Table
Position Strand Gene LocusTag Fraction 2-pentyl-furan 1.335528 mM remove 872,601 + AZOBR_RS04155 0.66 -1.0 872,601 + AZOBR_RS04155 0.66 -0.0 872,601 + AZOBR_RS04155 0.66 -0.6 872,601 + AZOBR_RS04155 0.66 +0.3 872,601 + AZOBR_RS04155 0.66 +0.3 872,602 - AZOBR_RS04155 0.66 -0.7 872,862 - -0.2 873,416 + -0.2 873,417 - +0.2 873,417 - -0.6 873,484 + +0.6 873,484 + -0.4 873,484 + -1.5 873,485 - -0.4 874,076 - AZOBR_RS04165 0.71 -0.8 874,207 + AZOBR_RS04165 0.85 -0.1 874,207 + AZOBR_RS04165 0.85 -1.0 874,207 + AZOBR_RS04165 0.85 -1.4 874,208 - AZOBR_RS04165 0.85 -0.1 874,208 - AZOBR_RS04165 0.85 -0.3 874,208 - AZOBR_RS04165 0.85 -0.0 874,208 - AZOBR_RS04165 0.85 -0.2 874,208 - AZOBR_RS04165 0.85 -0.1 874,388 + +0.3 874,388 + -1.0 874,472 + -0.4 874,472 + +0.1 874,472 + -0.5 874,472 + -0.5 874,472 + -0.2 874,472 + -0.4 874,472 + -0.1 874,473 - -0.5 874,473 - -0.4 874,473 - -2.3 874,628 + AZOBR_RS04170 0.23 -1.1 874,629 - AZOBR_RS04170 0.23 -0.3 874,643 + AZOBR_RS04170 0.24 -1.1 874,643 + AZOBR_RS04170 0.24 -1.7 874,643 + AZOBR_RS04170 0.24 -0.7 874,643 + AZOBR_RS04170 0.24 +1.7 874,643 + AZOBR_RS04170 0.24 +1.0 874,643 + AZOBR_RS04170 0.24 +2.3 874,644 - AZOBR_RS04170 0.24 -0.0 874,644 - AZOBR_RS04170 0.24 -0.6 874,664 + AZOBR_RS04170 0.26 -0.4 874,665 - AZOBR_RS04170 0.26 -0.5 874,665 - AZOBR_RS04170 0.26 +0.3 874,842 - AZOBR_RS04170 0.41 -0.5 874,842 - AZOBR_RS04170 0.41 -1.0 874,878 - AZOBR_RS04170 0.44 -0.4 874,887 - AZOBR_RS04170 0.45 +0.0 874,887 - AZOBR_RS04170 0.45 -0.5 874,934 + AZOBR_RS04170 0.49 -0.9 874,934 + AZOBR_RS04170 0.49 -0.1 874,959 - AZOBR_RS04170 0.51 +0.4 874,985 + AZOBR_RS04170 0.53 +0.0 874,985 + AZOBR_RS04170 0.53 -0.8 874,986 - AZOBR_RS04170 0.53 -0.6 874,986 - AZOBR_RS04170 0.53 -1.1 874,986 - AZOBR_RS04170 0.53 +0.1 874,988 + AZOBR_RS04170 0.54 +0.2 875,046 - AZOBR_RS04170 0.59 -0.3 875,129 + AZOBR_RS04170 0.66 +1.0 875,130 - AZOBR_RS04170 0.66 +0.1 875,130 - AZOBR_RS04170 0.66 -0.5
Or see this region's nucleotide sequence