Experiment: 2-pentyl-furan 1.335528 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS04080 and AZOBR_RS04085 are separated by 108 nucleotides AZOBR_RS04085 and AZOBR_RS04090 are separated by 21 nucleotides AZOBR_RS04090 and AZOBR_RS04095 are separated by 11 nucleotides
AZOBR_RS04080: AZOBR_RS04080 - cytochrome C, at 858,892 to 859,758
_RS04080
AZOBR_RS04085: AZOBR_RS04085 - membrane protein, at 859,867 to 860,610
_RS04085
AZOBR_RS04090: AZOBR_RS04090 - haloacid dehalogenase, at 860,632 to 861,300
_RS04090
AZOBR_RS04095: AZOBR_RS04095 - glutamate 5-kinase, at 861,312 to 862,442
_RS04095
Position (kb) 860
861
862 Strain fitness (log2 ratio) -2
-1
0
1
2 at 859.640 kb on + strand, within AZOBR_RS04080 at 859.640 kb on + strand, within AZOBR_RS04080 at 859.685 kb on - strand at 859.685 kb on - strand at 859.687 kb on + strand at 859.687 kb on + strand at 859.687 kb on + strand at 859.688 kb on - strand at 859.688 kb on - strand at 859.738 kb on - strand at 859.808 kb on + strand at 859.829 kb on - strand at 859.829 kb on - strand at 860.038 kb on + strand, within AZOBR_RS04085 at 860.230 kb on + strand, within AZOBR_RS04085 at 860.230 kb on + strand, within AZOBR_RS04085 at 860.230 kb on + strand, within AZOBR_RS04085 at 860.231 kb on - strand, within AZOBR_RS04085 at 860.297 kb on - strand, within AZOBR_RS04085 at 860.456 kb on - strand, within AZOBR_RS04085 at 860.588 kb on - strand at 861.063 kb on - strand, within AZOBR_RS04090 at 861.134 kb on + strand, within AZOBR_RS04090 at 861.135 kb on - strand, within AZOBR_RS04090 at 861.170 kb on + strand, within AZOBR_RS04090
Per-strain Table
Position Strand Gene LocusTag Fraction 2-pentyl-furan 1.335528 mM remove 859,640 + AZOBR_RS04080 0.86 -1.7 859,640 + AZOBR_RS04080 0.86 +0.9 859,685 - -0.2 859,685 - +1.9 859,687 + +0.2 859,687 + +1.3 859,687 + -1.0 859,688 - +0.1 859,688 - -0.9 859,738 - +2.3 859,808 + +0.4 859,829 - +0.7 859,829 - +0.2 860,038 + AZOBR_RS04085 0.23 +1.3 860,230 + AZOBR_RS04085 0.49 +0.5 860,230 + AZOBR_RS04085 0.49 -0.1 860,230 + AZOBR_RS04085 0.49 +0.2 860,231 - AZOBR_RS04085 0.49 -0.5 860,297 - AZOBR_RS04085 0.58 +2.3 860,456 - AZOBR_RS04085 0.79 -0.1 860,588 - -0.1 861,063 - AZOBR_RS04090 0.64 -0.4 861,134 + AZOBR_RS04090 0.75 -1.9 861,135 - AZOBR_RS04090 0.75 -1.3 861,170 + AZOBR_RS04090 0.80 +0.6
Or see this region's nucleotide sequence