Experiment: 2-pentyl-furan 1.335528 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS03090 and AZOBR_RS03095 are separated by 5 nucleotides AZOBR_RS03095 and AZOBR_RS03100 are separated by 155 nucleotides AZOBR_RS03100 and AZOBR_RS03105 are separated by 129 nucleotides
AZOBR_RS03090: AZOBR_RS03090 - 3-phosphoshikimate 1-carboxyvinyltransferase, at 659,390 to 660,727
_RS03090
AZOBR_RS03095: AZOBR_RS03095 - cytidylate kinase, at 660,733 to 661,395
_RS03095
AZOBR_RS03100: AZOBR_RS03100 - 30S ribosomal protein S1, at 661,551 to 663,260
_RS03100
AZOBR_RS03105: AZOBR_RS03105 - membrane protein, at 663,390 to 664,160
_RS03105
Position (kb) 661
662
663
664 Strain fitness (log2 ratio) -1
0
1 at 661.434 kb on + strand at 663.324 kb on + strand at 663.328 kb on + strand at 663.328 kb on + strand at 663.329 kb on - strand at 663.329 kb on - strand at 663.329 kb on - strand at 663.802 kb on + strand, within AZOBR_RS03105 at 663.802 kb on + strand, within AZOBR_RS03105 at 663.802 kb on + strand, within AZOBR_RS03105 at 663.802 kb on + strand, within AZOBR_RS03105 at 663.803 kb on - strand, within AZOBR_RS03105 at 663.803 kb on - strand, within AZOBR_RS03105 at 663.803 kb on - strand, within AZOBR_RS03105 at 663.803 kb on - strand, within AZOBR_RS03105 at 663.803 kb on - strand, within AZOBR_RS03105 at 663.803 kb on - strand, within AZOBR_RS03105 at 663.979 kb on + strand, within AZOBR_RS03105 at 663.980 kb on - strand, within AZOBR_RS03105 at 663.980 kb on - strand, within AZOBR_RS03105 at 664.144 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 2-pentyl-furan 1.335528 mM remove 661,434 + +0.7 663,324 + -0.3 663,328 + -0.3 663,328 + +0.3 663,329 - -0.1 663,329 - +0.6 663,329 - -0.8 663,802 + AZOBR_RS03105 0.53 +0.5 663,802 + AZOBR_RS03105 0.53 +0.1 663,802 + AZOBR_RS03105 0.53 -0.6 663,802 + AZOBR_RS03105 0.53 +0.1 663,803 - AZOBR_RS03105 0.54 +0.4 663,803 - AZOBR_RS03105 0.54 -0.1 663,803 - AZOBR_RS03105 0.54 +1.3 663,803 - AZOBR_RS03105 0.54 +0.1 663,803 - AZOBR_RS03105 0.54 +0.3 663,803 - AZOBR_RS03105 0.54 +1.2 663,979 + AZOBR_RS03105 0.76 -0.8 663,980 - AZOBR_RS03105 0.77 -0.0 663,980 - AZOBR_RS03105 0.77 -0.1 664,144 + -1.0
Or see this region's nucleotide sequence