Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS27910

Experiment: 2-pentyl-furan 1.335528 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAZOBR_RS27900 and AZOBR_RS27905 are separated by 47 nucleotidesAZOBR_RS27905 and AZOBR_RS27910 are separated by 112 nucleotides AZOBR_RS27900: AZOBR_RS27900 - FAD-binding oxidoreductase, at 428,448 to 430,520 _RS27900 AZOBR_RS27905: AZOBR_RS27905 - 50S ribosomal protein L21, at 430,568 to 431,032 _RS27905 AZOBR_RS27910: AZOBR_RS27910 - LysR family transcriptional regulator, at 431,145 to 432,035 _RS27910 Position (kb) 431 432 433Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 430.410 kb on + strandat 430.410 kb on + strandat 430.411 kb on - strandat 430.411 kb on - strandat 430.411 kb on - strandat 430.677 kb on - strand, within AZOBR_RS27905at 430.775 kb on + strand, within AZOBR_RS27905at 430.835 kb on + strand, within AZOBR_RS27905at 430.836 kb on - strand, within AZOBR_RS27905at 430.842 kb on - strand, within AZOBR_RS27905at 431.088 kb on - strandat 431.403 kb on + strand, within AZOBR_RS27910at 431.403 kb on + strand, within AZOBR_RS27910at 431.403 kb on + strand, within AZOBR_RS27910at 431.656 kb on - strand, within AZOBR_RS27910at 431.656 kb on - strand, within AZOBR_RS27910at 432.033 kb on + strandat 432.138 kb on - strandat 432.603 kb on - strandat 432.957 kb on + strandat 432.958 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 2-pentyl-furan 1.335528 mM
remove
430,410 + -1.7
430,410 + -0.3
430,411 - +1.6
430,411 - +0.7
430,411 - +3.3
430,677 - AZOBR_RS27905 0.23 -0.1
430,775 + AZOBR_RS27905 0.45 -0.5
430,835 + AZOBR_RS27905 0.57 -0.8
430,836 - AZOBR_RS27905 0.58 +2.1
430,842 - AZOBR_RS27905 0.59 -0.4
431,088 - -0.2
431,403 + AZOBR_RS27910 0.29 -0.7
431,403 + AZOBR_RS27910 0.29 +1.0
431,403 + AZOBR_RS27910 0.29 -3.3
431,656 - AZOBR_RS27910 0.57 -1.2
431,656 - AZOBR_RS27910 0.57 -1.3
432,033 + +0.5
432,138 - -0.1
432,603 - +0.1
432,957 + -0.1
432,958 - -3.0

Or see this region's nucleotide sequence