Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS27860

Experiment: 2-pentyl-furan 1.335528 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAZOBR_RS27855 and AZOBR_RS27860 are separated by 21 nucleotidesAZOBR_RS27860 and AZOBR_RS27865 are separated by 2 nucleotides AZOBR_RS27855: AZOBR_RS27855 - transcriptional regulator, at 418,129 to 419,169 _RS27855 AZOBR_RS27860: AZOBR_RS27860 - regulator, at 419,191 to 419,832 _RS27860 AZOBR_RS27865: AZOBR_RS27865 - histidine kinase, at 419,835 to 421,187 _RS27865 Position (kb) 419 420Strain fitness (log2 ratio) -3 -2 -1 0 1at 418.411 kb on + strand, within AZOBR_RS27855at 418.705 kb on + strand, within AZOBR_RS27855at 418.706 kb on - strand, within AZOBR_RS27855at 418.706 kb on - strand, within AZOBR_RS27855at 419.357 kb on - strand, within AZOBR_RS27860at 419.519 kb on + strand, within AZOBR_RS27860at 419.519 kb on + strand, within AZOBR_RS27860at 420.655 kb on + strand, within AZOBR_RS27865

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 2-pentyl-furan 1.335528 mM
remove
418,411 + AZOBR_RS27855 0.27 +0.5
418,705 + AZOBR_RS27855 0.55 -1.1
418,706 - AZOBR_RS27855 0.55 -0.0
418,706 - AZOBR_RS27855 0.55 -1.4
419,357 - AZOBR_RS27860 0.26 -1.2
419,519 + AZOBR_RS27860 0.51 -3.2
419,519 + AZOBR_RS27860 0.51 +1.1
420,655 + AZOBR_RS27865 0.61 +0.4

Or see this region's nucleotide sequence