Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS27235

Experiment: 2-pentyl-furan 1.335528 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS27230 and AZOBR_RS27235 are separated by 150 nucleotidesAZOBR_RS27235 and AZOBR_RS27240 overlap by 4 nucleotides AZOBR_RS27230: AZOBR_RS27230 - hypothetical protein, at 251,115 to 251,426 _RS27230 AZOBR_RS27235: AZOBR_RS27235 - exported protein of unknown function, at 251,577 to 253,319 _RS27235 AZOBR_RS27240: AZOBR_RS27240 - hypothetical protein, at 253,316 to 255,229 _RS27240 Position (kb) 251 252 253 254Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 250.776 kb on - strandat 251.271 kb on + strand, within AZOBR_RS27230at 251.307 kb on + strand, within AZOBR_RS27230at 251.308 kb on - strand, within AZOBR_RS27230at 251.459 kb on + strandat 251.459 kb on + strandat 251.459 kb on + strandat 251.459 kb on + strandat 251.459 kb on + strandat 251.459 kb on + strandat 251.459 kb on + strandat 251.460 kb on - strandat 251.460 kb on - strandat 251.460 kb on - strandat 251.460 kb on - strandat 251.460 kb on - strandat 251.460 kb on - strandat 251.501 kb on + strandat 251.501 kb on + strandat 251.502 kb on - strandat 251.671 kb on + strandat 251.672 kb on - strandat 251.672 kb on - strandat 251.690 kb on + strandat 251.690 kb on + strandat 251.691 kb on - strandat 251.691 kb on - strandat 251.691 kb on - strandat 251.691 kb on - strandat 252.031 kb on + strand, within AZOBR_RS27235at 252.032 kb on - strand, within AZOBR_RS27235at 252.032 kb on - strand, within AZOBR_RS27235at 252.032 kb on - strand, within AZOBR_RS27235at 252.100 kb on + strand, within AZOBR_RS27235at 252.101 kb on - strand, within AZOBR_RS27235at 252.101 kb on - strand, within AZOBR_RS27235at 252.101 kb on - strand, within AZOBR_RS27235at 252.220 kb on + strand, within AZOBR_RS27235at 252.220 kb on + strand, within AZOBR_RS27235at 252.221 kb on - strand, within AZOBR_RS27235at 252.221 kb on - strand, within AZOBR_RS27235at 252.388 kb on + strand, within AZOBR_RS27235at 252.388 kb on + strand, within AZOBR_RS27235at 252.388 kb on + strand, within AZOBR_RS27235at 252.388 kb on + strand, within AZOBR_RS27235at 252.389 kb on - strand, within AZOBR_RS27235at 252.389 kb on - strand, within AZOBR_RS27235at 252.466 kb on + strandat 252.563 kb on - strand, within AZOBR_RS27235at 252.889 kb on + strand, within AZOBR_RS27235at 252.889 kb on + strand, within AZOBR_RS27235at 252.890 kb on - strand, within AZOBR_RS27235at 253.021 kb on + strand, within AZOBR_RS27235at 253.021 kb on + strand, within AZOBR_RS27235at 253.021 kb on + strand, within AZOBR_RS27235at 253.021 kb on + strand, within AZOBR_RS27235at 253.022 kb on - strand, within AZOBR_RS27235at 253.022 kb on - strand, within AZOBR_RS27235at 253.485 kb on + strandat 253.486 kb on - strandat 253.492 kb on - strandat 253.492 kb on - strandat 253.684 kb on + strand, within AZOBR_RS27240at 253.684 kb on + strand, within AZOBR_RS27240at 253.684 kb on + strand, within AZOBR_RS27240at 253.684 kb on + strand, within AZOBR_RS27240at 253.784 kb on - strand, within AZOBR_RS27240at 253.784 kb on - strand, within AZOBR_RS27240at 253.834 kb on + strand, within AZOBR_RS27240

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-pentyl-furan 1.335528 mM
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250,776 - -0.3
251,271 + AZOBR_RS27230 0.50 -0.7
251,307 + AZOBR_RS27230 0.62 +1.5
251,308 - AZOBR_RS27230 0.62 -0.8
251,459 + +0.7
251,459 + +2.1
251,459 + -0.8
251,459 + -0.3
251,459 + +0.5
251,459 + -0.3
251,459 + +2.1
251,460 - +1.5
251,460 - +0.0
251,460 - +2.5
251,460 - +0.6
251,460 - +1.5
251,460 - -0.8
251,501 + -3.6
251,501 + +0.4
251,502 - -3.6
251,671 + +2.9
251,672 - +2.1
251,672 - -0.5
251,690 + -2.8
251,690 + -0.8
251,691 - +0.5
251,691 - +1.1
251,691 - +0.8
251,691 - -2.0
252,031 + AZOBR_RS27235 0.26 -1.9
252,032 - AZOBR_RS27235 0.26 -2.5
252,032 - AZOBR_RS27235 0.26 +0.2
252,032 - AZOBR_RS27235 0.26 +1.1
252,100 + AZOBR_RS27235 0.30 +0.6
252,101 - AZOBR_RS27235 0.30 -0.2
252,101 - AZOBR_RS27235 0.30 -3.2
252,101 - AZOBR_RS27235 0.30 -0.2
252,220 + AZOBR_RS27235 0.37 +2.4
252,220 + AZOBR_RS27235 0.37 -1.9
252,221 - AZOBR_RS27235 0.37 +0.5
252,221 - AZOBR_RS27235 0.37 -0.3
252,388 + AZOBR_RS27235 0.47 -0.2
252,388 + AZOBR_RS27235 0.47 +2.0
252,388 + AZOBR_RS27235 0.47 +1.4
252,388 + AZOBR_RS27235 0.47 -0.2
252,389 - AZOBR_RS27235 0.47 -0.8
252,389 - AZOBR_RS27235 0.47 -1.4
252,466 + -0.3
252,563 - AZOBR_RS27235 0.57 +1.5
252,889 + AZOBR_RS27235 0.75 -2.8
252,889 + AZOBR_RS27235 0.75 +0.6
252,890 - AZOBR_RS27235 0.75 +0.7
253,021 + AZOBR_RS27235 0.83 +0.8
253,021 + AZOBR_RS27235 0.83 -0.6
253,021 + AZOBR_RS27235 0.83 -2.2
253,021 + AZOBR_RS27235 0.83 -1.3
253,022 - AZOBR_RS27235 0.83 +2.1
253,022 - AZOBR_RS27235 0.83 +0.1
253,485 + +0.7
253,486 - -0.1
253,492 - +0.1
253,492 - -0.8
253,684 + AZOBR_RS27240 0.19 +0.3
253,684 + AZOBR_RS27240 0.19 -1.2
253,684 + AZOBR_RS27240 0.19 +1.0
253,684 + AZOBR_RS27240 0.19 -0.5
253,784 - AZOBR_RS27240 0.24 -1.2
253,784 - AZOBR_RS27240 0.24 -0.5
253,834 + AZOBR_RS27240 0.27 +0.5

Or see this region's nucleotide sequence