Experiment: 2-pentyl-furan 1.335528 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS25620 and AZOBR_RS25625 are separated by 63 nucleotides AZOBR_RS25625 and AZOBR_RS25630 are separated by 23 nucleotides AZOBR_RS25630 and AZOBR_RS25635 overlap by 4 nucleotides
AZOBR_RS25620: AZOBR_RS25620 - 2-amino-thiazoline-4-carboxylic acid hydrolase, at 797,232 to 797,696
_RS25620
AZOBR_RS25625: AZOBR_RS25625 - leucine/isoleucine/valine transporter ATP-binding subunit, at 797,760 to 798,458
_RS25625
AZOBR_RS25630: AZOBR_RS25630 - ABC transporter, at 798,482 to 799,249
_RS25630
AZOBR_RS25635: AZOBR_RS25635 - high-affinity branched-chain amino acid ABC transporter (permease protein) (fragment), at 799,246 to 800,232
_RS25635
Position (kb) 798
799
800 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 797.645 kb on - strand, within AZOBR_RS25620 at 797.782 kb on + strand at 797.783 kb on - strand at 797.783 kb on - strand at 798.501 kb on + strand at 798.501 kb on + strand at 798.768 kb on + strand, within AZOBR_RS25630 at 798.769 kb on - strand, within AZOBR_RS25630 at 799.547 kb on + strand, within AZOBR_RS25635 at 799.548 kb on - strand, within AZOBR_RS25635 at 799.548 kb on - strand, within AZOBR_RS25635 at 799.548 kb on - strand, within AZOBR_RS25635 at 799.548 kb on - strand, within AZOBR_RS25635 at 799.548 kb on - strand, within AZOBR_RS25635 at 799.697 kb on + strand, within AZOBR_RS25635 at 799.697 kb on + strand, within AZOBR_RS25635 at 799.697 kb on + strand, within AZOBR_RS25635 at 799.698 kb on - strand, within AZOBR_RS25635 at 799.757 kb on + strand, within AZOBR_RS25635 at 799.758 kb on - strand, within AZOBR_RS25635 at 799.758 kb on - strand, within AZOBR_RS25635 at 799.760 kb on + strand, within AZOBR_RS25635 at 799.760 kb on + strand, within AZOBR_RS25635 at 799.760 kb on - strand, within AZOBR_RS25635 at 799.761 kb on - strand, within AZOBR_RS25635 at 799.761 kb on - strand, within AZOBR_RS25635 at 799.868 kb on + strand, within AZOBR_RS25635 at 799.907 kb on + strand, within AZOBR_RS25635 at 799.908 kb on - strand, within AZOBR_RS25635 at 799.908 kb on - strand, within AZOBR_RS25635 at 799.908 kb on - strand, within AZOBR_RS25635 at 800.034 kb on - strand, within AZOBR_RS25635 at 800.048 kb on + strand, within AZOBR_RS25635 at 800.048 kb on + strand, within AZOBR_RS25635 at 800.049 kb on - strand, within AZOBR_RS25635 at 800.156 kb on + strand at 800.156 kb on + strand at 800.157 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 2-pentyl-furan 1.335528 mM remove 797,645 - AZOBR_RS25620 0.89 -0.9 797,782 + -2.2 797,783 - -0.1 797,783 - -0.8 798,501 + -0.0 798,501 + +0.4 798,768 + AZOBR_RS25630 0.37 -1.3 798,769 - AZOBR_RS25630 0.37 +1.5 799,547 + AZOBR_RS25635 0.30 +0.1 799,548 - AZOBR_RS25635 0.31 +0.5 799,548 - AZOBR_RS25635 0.31 +0.0 799,548 - AZOBR_RS25635 0.31 -2.0 799,548 - AZOBR_RS25635 0.31 -3.3 799,548 - AZOBR_RS25635 0.31 -0.8 799,697 + AZOBR_RS25635 0.46 -0.1 799,697 + AZOBR_RS25635 0.46 -2.3 799,697 + AZOBR_RS25635 0.46 +0.7 799,698 - AZOBR_RS25635 0.46 -0.5 799,757 + AZOBR_RS25635 0.52 -1.5 799,758 - AZOBR_RS25635 0.52 +0.7 799,758 - AZOBR_RS25635 0.52 -0.7 799,760 + AZOBR_RS25635 0.52 +1.1 799,760 + AZOBR_RS25635 0.52 -1.0 799,760 - AZOBR_RS25635 0.52 -0.2 799,761 - AZOBR_RS25635 0.52 +0.2 799,761 - AZOBR_RS25635 0.52 +0.3 799,868 + AZOBR_RS25635 0.63 -0.7 799,907 + AZOBR_RS25635 0.67 +0.0 799,908 - AZOBR_RS25635 0.67 +0.2 799,908 - AZOBR_RS25635 0.67 -1.7 799,908 - AZOBR_RS25635 0.67 -1.0 800,034 - AZOBR_RS25635 0.80 -0.8 800,048 + AZOBR_RS25635 0.81 -0.1 800,048 + AZOBR_RS25635 0.81 +1.5 800,049 - AZOBR_RS25635 0.81 -3.2 800,156 + -1.2 800,156 + +0.2 800,157 - +0.4
Or see this region's nucleotide sequence