Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS22120

Experiment: 2-pentyl-furan 1.335528 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS22115 and AZOBR_RS22120 overlap by 43 nucleotidesAZOBR_RS22120 and AZOBR_RS22125 are separated by 677 nucleotides AZOBR_RS22115: AZOBR_RS22115 - glycosyl transferase, at 1,726,895 to 1,727,755 _RS22115 AZOBR_RS22120: AZOBR_RS22120 - hypothetical protein, at 1,727,713 to 1,728,528 _RS22120 AZOBR_RS22125: AZOBR_RS22125 - secretion protein, at 1,729,206 to 1,730,339 _RS22125 Position (kb) 1727 1728 1729Strain fitness (log2 ratio) -2 -1 0 1at 1726.738 kb on - strandat 1726.738 kb on - strandat 1726.738 kb on - strandat 1726.738 kb on - strandat 1726.738 kb on - strandat 1727.495 kb on + strand, within AZOBR_RS22115at 1727.564 kb on + strand, within AZOBR_RS22115at 1727.675 kb on + strandat 1727.676 kb on - strandat 1727.676 kb on - strandat 1727.844 kb on - strand, within AZOBR_RS22120at 1727.880 kb on - strand, within AZOBR_RS22120at 1727.901 kb on - strand, within AZOBR_RS22120at 1728.350 kb on + strand, within AZOBR_RS22120at 1728.627 kb on + strandat 1728.627 kb on + strandat 1728.628 kb on - strandat 1728.871 kb on - strandat 1729.105 kb on - strandat 1729.106 kb on + strandat 1729.107 kb on - strandat 1729.201 kb on + strandat 1729.267 kb on - strandat 1729.272 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-pentyl-furan 1.335528 mM
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1,726,738 - +0.6
1,726,738 - -0.4
1,726,738 - -0.4
1,726,738 - -0.9
1,726,738 - +0.6
1,727,495 + AZOBR_RS22115 0.70 -0.9
1,727,564 + AZOBR_RS22115 0.78 +0.3
1,727,675 + -0.3
1,727,676 - +0.3
1,727,676 - -0.1
1,727,844 - AZOBR_RS22120 0.16 -0.5
1,727,880 - AZOBR_RS22120 0.20 -0.4
1,727,901 - AZOBR_RS22120 0.23 -1.2
1,728,350 + AZOBR_RS22120 0.78 -1.2
1,728,627 + -1.3
1,728,627 + -0.9
1,728,628 - +0.2
1,728,871 - +0.4
1,729,105 - -2.0
1,729,106 + -1.6
1,729,107 - +0.9
1,729,201 + -0.1
1,729,267 - -0.3
1,729,272 + -0.2

Or see this region's nucleotide sequence